PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c27_5350V3.3.p
Common NamePHYPADRAFT_95231
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 499aa    MW: 55916.1 Da    PI: 9.9256
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c27_5350V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.2e-11337385154
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                        ++y GVrw+   ++W +eIr     g +++++lg++ t+eeAa a++a   +++
  Pp3c27_5350V3.3.p 337 PRYNGVRWK--AKKWTSEIRPT---GAKRTVWLGTYNTEEEAASAYDAGIYYYN 385
                        6899****5..68*****9993...335*******************9777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.38E-13337395No hitNo description
PfamPF008473.0E-7337379IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-11338395IPR016177DNA-binding domain
SMARTSM003801.4E-5338399IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-15338395IPR001471AP2/ERF domain
PROSITE profilePS5103212.088338400IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MWTPTGNRQS DNISKMEDGA NNRTKTRRRV INQVRVFAGT VKWSYLEMED DLKCRFWNFF  60
SGNKSKCNNK NCPTCYPKPV ETTESSHFRD GRISTLLQKI RTWPRLGSRR IRNHTAQGAQ  120
QPQPGQSPLP GRMKAASFPA KHRDLSRARF LPRFKKFESI REESDYSGST RAENQLPKAS  180
ESLYTLPVVE VDIGGNDTES TSVEDLSKYS YSFGSDMSFG NRDDSMAKDQ SMSRDIPSTM  240
IQNIDPPRNT GQDTHPTSAS SAEVSESAGP TFQSRGYAVP FQGSSLGPTT PSPAGSSEVA  300
DSLRTTYDHG WHTQTTDQIE SPVPEPCALH VEKIPQPRYN GVRWKAKKWT SEIRPTGAKR  360
TVWLGTYNTE EEAASAYDAG IYYYNKPRNY NFPDSETYLP RLNPSMDDRA QLNFIKTQAR  420
LIAQKRAKIM AEHTAVPRRN SHPSEFNPRT PDTPSSEAGP ADSRPGMGEP SRSSSIFTSL  480
KRVLSGDSGF SKTSRRKY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367815.10.0uncharacterized protein LOC112278487
RefseqXP_024367816.10.0uncharacterized protein LOC112278487
RefseqXP_024367817.10.0uncharacterized protein LOC112278487
RefseqXP_024367818.10.0uncharacterized protein LOC112278487
RefseqXP_024367819.10.0uncharacterized protein LOC112278487
RefseqXP_024367820.10.0uncharacterized protein LOC112278487
RefseqXP_024367821.10.0uncharacterized protein LOC112278487
TrEMBLA9TNY50.0A9TNY5_PHYPA; Predicted protein
STRINGPP1S276_57V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-10ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]