PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c27_600V3.2.p
Common NamePHYPADRAFT_95428, WRKY34
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 366aa    MW: 40274.2 Da    PI: 7.8553
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c27_600V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.54.8e-22149207259
                       --SS-.EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgyn.WrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDg++ W+KYG K +++s++ r+YY+C+ ++C++kk v+ +++dp+++e+tY g+H ++
  Pp3c27_600V3.2.p 149 DDGHRgWKKYGNKAIQNSNHCRGYYKCSLKECRAKKMVQLTDRDPTLFEVTYVGKHSCS 207
                       688866**************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-23144208IPR003657WRKY domain
SuperFamilySSF1182901.44E-20147207IPR003657WRKY domain
SMARTSM007745.2E-22148208IPR003657WRKY domain
PfamPF031061.5E-19149206IPR003657WRKY domain
PROSITE profilePS5081116.421155209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MRSSSAVEGQ FPPGWNTKFF DVTNHAKDHL SPRLNVVAPL NSLRSSLHKD PLPYHSITTK  60
GNGCTPRNSG SPRFTDPFSQ PPPGEGSSTQ QQHPHEQNLN TRLLAVDSNP PWPRISSAAN  120
SEARKFGGQK AKPGVVLQKL NDGKRGIPDD GHRGWKKYGN KAIQNSNHCR GYYKCSLKEC  180
RAKKMVQLTD RDPTLFEVTY VGKHSCSSST AHPRCRHRST QMLSSSLVHV GSNGSSEGGQ  240
ATSTVTKEDR AEDWKTQRAA ASIGTNLVVD VSNPIIDNGW KGGKYSNEHN YSYSYFNMGM  300
TTSTTASTAS EEPKQCEVGE GDDDVDQDEE GDVCMDTYLH QSSRHHQAAY SLWHDFDTYP  360
TLSTD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367367.10.0uncharacterized protein LOC112278317 isoform X1
RefseqXP_024367368.10.0probable WRKY transcription factor 8 isoform X2
RefseqXP_024367369.10.0probable WRKY transcription factor 71 isoform X3
RefseqXP_024367370.10.0probable WRKY transcription factor 71 isoform X3
TrEMBLA0A2K1IA520.0A0A2K1IA52_PHYPA; Uncharacterized protein
TrEMBLA9TPH20.0A9TPH2_PHYPA; Transcription factor WRKY34
STRINGPP1S280_53V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-15WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]