PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c27_600V3.4.p
Common NamePHYPADRAFT_95428, WRKY34
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 488aa    MW: 53868.8 Da    PI: 7.441
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c27_600V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.97.3e-22271329259
                       --SS-.EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgyn.WrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDg++ W+KYG K +++s++ r+YY+C+ ++C++kk v+ +++dp+++e+tY g+H ++
  Pp3c27_600V3.4.p 271 DDGHRgWKKYGNKAIQNSNHCRGYYKCSLKECRAKKMVQLTDRDPTLFEVTYVGKHSCS 329
                       688866**************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-23266330IPR003657WRKY domain
SuperFamilySSF1182902.22E-20269329IPR003657WRKY domain
SMARTSM007745.2E-22270330IPR003657WRKY domain
PfamPF031062.3E-19271328IPR003657WRKY domain
PROSITE profilePS5081116.421277331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MSFRYNTSVP RLKGDRPEFE RCVQTVKEML STAIVHQRDL LNLVVSHYPQ SIVATPIADE  60
RIGCGVLTPE FPISPLVLQE LKAYIENSLN YCHLALCSLR EINLNSFTSS PSDSSPSTLN  120
TSMRSSSAVE GQFPPGWNTK FFDVTNHAKD HLSPRLNVVA PLNSLRSSLH KDPLPYHSIT  180
TKGNGCTPRN SGSPRFTDPF SQPPPGEGSS TQQQHPHEQN LNTRLLAVDS NPPWPRISSA  240
ANSEARKFGG QKAKPGVVLQ KLNDGKRGIP DDGHRGWKKY GNKAIQNSNH CRGYYKCSLK  300
ECRAKKMVQL TDRDPTLFEV TYVGKHSCSS STAHPRCRHR STQMLSSSLV HVGSNGSSEG  360
GQATSTVTKE DRAEDWKTQR AAASIGTNLV VDVSNPIIDN GWKGGKYSNE HNYSYSYFNM  420
GMTTSTTAST ASEEPKQCEV GEGDDDVDQD EEGDVCMDTY LHQSSRHHQA AYSLWHDFDT  480
YPTLSTD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367367.10.0uncharacterized protein LOC112278317 isoform X1
TrEMBLA9TPH20.0A9TPH2_PHYPA; Transcription factor WRKY34
STRINGPP1S280_53V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-15WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]