PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c27_600V3.5.p

Common Name

PHYPADRAFT_95428, WRKY34

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

WRKY

Protein Properties

Length: 488aa MW: 53868.8 Da PI: 7.441

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c27_600V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	68.9	7.3e-22	271	329	2	59
--SS-.EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgyn.WrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDg++ W+KYG K +++s++ r+YY+C+ ++C++kk v+ +++dp+++e+tY g+H ++ Pp3c27_600V3.5.p 271 DDGHRgWKKYGNKAIQNSNHCRGYYKCSLKECRAKKMVQLTDRDPTLFEVTYVGKHSCS 329 688866**************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.4E-23	266	330	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-20	269	329	IPR003657	WRKY domain
SMART	SM00774	5.2E-22	270	330	IPR003657	WRKY domain
Pfam	PF03106	2.3E-19	271	328	IPR003657	WRKY domain
PROSITE profile	PS50811	16.421	277	331	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MSFRYNTSVP RLKGDRPEFE RCVQTVKEML STAIVHQRDL LNLVVSHYPQ SIVATPIADE 60 RIGCGVLTPE FPISPLVLQE LKAYIENSLN YCHLALCSLR EINLNSFTSS PSDSSPSTLN 120 TSMRSSSAVE GQFPPGWNTK FFDVTNHAKD HLSPRLNVVA PLNSLRSSLH KDPLPYHSIT 180 TKGNGCTPRN SGSPRFTDPF SQPPPGEGSS TQQQHPHEQN LNTRLLAVDS NPPWPRISSA 240 ANSEARKFGG QKAKPGVVLQ KLNDGKRGIP DDGHRGWKKY GNKAIQNSNH CRGYYKCSLK 300 ECRAKKMVQL TDRDPTLFEV TYVGKHSCSS STAHPRCRHR STQMLSSSLV HVGSNGSSEG 360 GQATSTVTKE DRAEDWKTQR AAASIGTNLV VDVSNPIIDN GWKGGKYSNE HNYSYSYFNM 420 GMTTSTTAST ASEEPKQCEV GEGDDDVDQD EEGDVCMDTY LHQSSRHHQA AYSLWHDFDT 480 YPTLSTD*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MSFRYNTSVP RLKGDRPEFE RCVQTVKEML STAIVHQRDL LNLVVSHYPQ SIVATPIADE  60
RIGCGVLTPE FPISPLVLQE LKAYIENSLN YCHLALCSLR EINLNSFTSS PSDSSPSTLN  120
TSMRSSSAVE GQFPPGWNTK FFDVTNHAKD HLSPRLNVVA PLNSLRSSLH KDPLPYHSIT  180
TKGNGCTPRN SGSPRFTDPF SQPPPGEGSS TQQQHPHEQN LNTRLLAVDS NPPWPRISSA  240
ANSEARKFGG QKAKPGVVLQ KLNDGKRGIP DDGHRGWKKY GNKAIQNSNH CRGYYKCSLK  300
ECRAKKMVQL TDRDPTLFEV TYVGKHSCSS STAHPRCRHR STQMLSSSLV HVGSNGSSEG  360
GQATSTVTKE DRAEDWKTQR AAASIGTNLV VDVSNPIIDN GWKGGKYSNE HNYSYSYFNM  420
GMTTSTTAST ASEEPKQCEV GEGDDDVDQD EEGDVCMDTY LHQSSRHHQA AYSLWHDFDT  480
YPTLSTD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024367367.1	0.0	uncharacterized protein LOC112278317 isoform X1
TrEMBL	A9TPH2	0.0	A9TPH2_PHYPA; Transcription factor WRKY34
STRING	PP1S280_53V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	5e-15	WRKY DNA-binding protein 55

Link Out ? help Back to Top
Phytozome	Pp3c27_600V3.5.p
Entrez Gene	5943690

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]