PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c27_7430V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 306aa    MW: 33777.5 Da    PI: 7.1595
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c27_7430V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.41.1e-1333695128
                NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k++++vg+kk Lvfy+g+apkgekt+W+mheyrl
  Pp3c27_7430V3.4.p   3 KGHSKVGVKKALVFYRGKAPKGEKTNWIMHEYRL 36 
                        57789***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.927165IPR003441NAC domain
SuperFamilySSF1019415.1E-17465IPR003441NAC domain
PfamPF023658.3E-6636IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSKGHSKVGV KKALVFYRGK APKGEKTNWI MHEYRLAEGV STSTHHPRRN SSRLDDWVLC  60
RIYEKTSHAQ RASKEYENSS VEEVLASLPD SVDDLRFVLP RLNSLNGNLE LAVQQEALGD  120
NRLTEKASEN GCLSANFDSI QKGTMSNNPG SLLTLANDWK LQQSMTINHD TLESSRLMGH  180
LASTSSVHRP ALSTRPMANS FMAQFRHPPR SYHLCPSSGQ EKILPAGHST FDEEVQSTLR  240
SSAMGYTNAR SSNDQGLETM FSAVSYEDRS NPSYGGPAVT EHSVYPAIPT PPSMDFNFSY  300
AGDFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-21771113171NO APICAL MERISTEM PROTEIN
1ut4_B3e-21771113171NO APICAL MERISTEM PROTEIN
1ut7_A3e-21771113171NO APICAL MERISTEM PROTEIN
1ut7_B3e-21771113171NO APICAL MERISTEM PROTEIN
3swm_A3e-21171110174NAC domain-containing protein 19
3swm_B3e-21171110174NAC domain-containing protein 19
3swm_C3e-21171110174NAC domain-containing protein 19
3swm_D3e-21171110174NAC domain-containing protein 19
3swp_A3e-21171110174NAC domain-containing protein 19
3swp_B3e-21171110174NAC domain-containing protein 19
3swp_C3e-21171110174NAC domain-containing protein 19
3swp_D3e-21171110174NAC domain-containing protein 19
4dul_A3e-21771113171NAC domain-containing protein 19
4dul_B3e-21771113171NAC domain-containing protein 19
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.26550.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367539.10.0NAC domain-containing protein 72-like isoform X2
TrEMBLA0A2K1IB160.0A0A2K1IB16_PHYPA; Uncharacterized protein
STRINGPP1S164_25V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-29NAC family protein