PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c27_7510V3.2.p
Common NamePHYPADRAFT_140223
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 161aa    MW: 18119.7 Da    PI: 10.3831
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c27_7510V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.1e-52151431128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelv +yL +k+e+ ++++  vi+e+d+yk++PwdLp k+  +e ewyfFs+rd+ky++g r+nra++sg+Wkatg+d++v
  Pp3c27_7510V3.2.p  15 LPPGFRFHPTDEELVLHYLWRKTESATFSI-PVITELDLYKYDPWDLPGKAILGEGEWYFFSPRDRKYPNGARPNRAAASGFWKATGTDRPV 105
                        79***************************9.89***************76667889************************************ PP

                NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++  + +++g+kk Lvfykgrapkg+kt+Wvmheyrl
  Pp3c27_7510V3.2.p 106 HTSrgTLQKIGVKKALVFYKGRAPKGVKTTWVMHEYRL 143
                        *99555567***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-589148IPR003441NAC domain
PROSITE profilePS5100554.72315161IPR003441NAC domain
PfamPF023651.2E-2716143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MASSSGVPVI PQIELPPGFR FHPTDEELVL HYLWRKTESA TFSIPVITEL DLYKYDPWDL  60
PGKAILGEGE WYFFSPRDRK YPNGARPNRA AASGFWKATG TDRPVHTSRG TLQKIGVKKA  120
LVFYKGRAPK GVKTTWVMHE YRLADGISPS SNTTRKPGSL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-641016112153NO APICAL MERISTEM PROTEIN
1ut4_B3e-641016112153NO APICAL MERISTEM PROTEIN
1ut7_A3e-641016112153NO APICAL MERISTEM PROTEIN
1ut7_B3e-641016112153NO APICAL MERISTEM PROTEIN
3swm_A3e-641016115156NAC domain-containing protein 19
3swm_B3e-641016115156NAC domain-containing protein 19
3swm_C3e-641016115156NAC domain-containing protein 19
3swm_D3e-641016115156NAC domain-containing protein 19
3swp_A3e-641016115156NAC domain-containing protein 19
3swp_B3e-641016115156NAC domain-containing protein 19
3swp_C3e-641016115156NAC domain-containing protein 19
3swp_D3e-641016115156NAC domain-containing protein 19
4dul_A3e-641016112153NAC domain-containing protein 19
4dul_B3e-641016112153NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during anther and flower development and leaf senescence. {ECO:0000269|PubMed:22278768}.
UniprotTISSUE SPECIFICITY: Highest expression in stamens. Expressed in leaves. {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:22278768}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367540.11e-115NAC transcription factor 25-like
RefseqXP_024367541.11e-115NAC transcription factor 25-like
RefseqXP_024367542.11e-115NAC transcription factor 25-like
RefseqXP_024367544.11e-115NAC transcription factor 25-like
RefseqXP_024367545.11e-115NAC transcription factor 25-like
RefseqXP_024367546.11e-115NAC transcription factor 25-like
RefseqXP_024367547.11e-115NAC transcription factor 25-like
RefseqXP_024367548.11e-115NAC transcription factor 25-like
RefseqXP_024367549.11e-115NAC transcription factor 25-like
RefseqXP_024367550.11e-115NAC transcription factor 25-like
RefseqXP_024367551.11e-115NAC transcription factor 25-like
RefseqXP_024367552.11e-115NAC transcription factor 25-like
SwissprotQ8H4S42e-70NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBLA0A2K1IB211e-114A0A2K1IB21_PHYPA; Uncharacterized protein
TrEMBLA9T4L61e-114A9T4L6_PHYPA; Predicted protein
STRINGPP1S164_33V6.11e-114(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.25e-71NAC domain containing protein 47
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]