PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_11380V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 768aa    MW: 85459 Da    PI: 5.5583
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_11380V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3759.7e-1153997602373
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL++cA+av++ d + a++l+ +l++++s +g+  qR+a+yf+eAL a++++++ +ly+al+  + s   +++ l+a+ lf e +P++++
  Pp3c2_11380V3.2.p 399 TDLLIRCAQAVEQADYRHANELIHELRHHSSAYGNGSQRMAHYFMEALVAKISGTGGQLYSALSNYRPS---EAQMLKAQMLFCEHCPFIQV 487
                        689************************************************************888888...8999**************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                         h+ aN+aI+ a++g+ rvHiiD++i +G+QWp+L+++L++Rpegpp+lRiTg+ +     + +++ tg+rLak+A+++gvpfef++ +a++
  Pp3c2_11380V3.2.p 488 PHIYANHAIMVAFKGAPRVHIIDYGILYGIQWPCLIHQLSQRPEGPPHLRITGFRP-----SARIQDTGRRLAKLAKQMGVPFEFHA-IAEK 573
                        *******************************************************9.....88************************.7*** PP

               GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                        +e++++ +L ++ +E+laVn++++  +lldesv+ +s+r+ vL+ ++sl+Pk++v    +a +n++ F+ rf eal y+s++fds+e ++p+
  Pp3c2_11380V3.2.p 574 WEAITPAHLLLRDDEVLAVNSMFRFRHLLDESVTAASPRNLVLSRIRSLNPKIFVQGVLNAGYNAPFFMSRFREALAYFSTIFDSMECSFPA 665
                        ******************************************************************************************** PP

               GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                        e+ +r+ +++e++grei nvvaceg er+er et+++W++r ++aGF++ p s ++++++++ +r ++ d y + e+ ++++lgWk+r   +
  Pp3c2_11380V3.2.p 666 EHPDRQIIDHEIVGREILNVVACEGPERVERSETYRQWQARTMRAGFQQKPNSPDVMAKIRMAMRSYHRD-YGIGEDGAWFLLGWKERITHA 756
                        ********************************************************************66.********************* PP

               GRAS 370 vSaW 373
                        +++W
  Pp3c2_11380V3.2.p 757 MTVW 760
                        **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.022372742IPR005202Transcription factor GRAS
PfamPF035143.3E-112399760IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0030154Biological Processcell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MAGSKHERSG DSPVGTGEVS PLAAQLQQAW LQTQMPKAQK RSFTSVANAQ NQLPRLSPPG  60
PGSEMSASSK PPSSSVLKSL STLFPELANV QEKKEAKISS VFEEGEQPIP IHPELRQKKA  120
ECLEVMFGQD VVEQTQAQGL RDYDRHASTE RSLSDSLIQQ SDDSLDFSDL GPLSVSNSFS  180
RPSAQPGRGT FEDDLSYICS AYGSRPSASE YETSAEVEQE KTPLFEYLTD ILMDENVEEK  240
KCMFIEMSAY QAMAKELGDL ISYDPPPMPI PETRRSDPHF EEDVRFVDSW IDEILSGPLP  300
ADRTDSPGAE AKLDIKHGSS PEELYSHTDA DRGSSVWNDT ASDTASYLHP DSTLSPVDFG  360
NSHALENGSG GSLQVGTRHL SSISSSNGNG VHAPPVDLTD LLIRCAQAVE QADYRHANEL  420
IHELRHHSSA YGNGSQRMAH YFMEALVAKI SGTGGQLYSA LSNYRPSEAQ MLKAQMLFCE  480
HCPFIQVPHI YANHAIMVAF KGAPRVHIID YGILYGIQWP CLIHQLSQRP EGPPHLRITG  540
FRPSARIQDT GRRLAKLAKQ MGVPFEFHAI AEKWEAITPA HLLLRDDEVL AVNSMFRFRH  600
LLDESVTAAS PRNLVLSRIR SLNPKIFVQG VLNAGYNAPF FMSRFREALA YFSTIFDSME  660
CSFPAEHPDR QIIDHEIVGR EILNVVACEG PERVERSETY RQWQARTMRA GFQQKPNSPD  720
VMAKIRMAMR SYHRDYGIGE DGAWFLLGWK ERITHAMTVW EPLPDSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5640476224379Protein SCARECROW
5b3h_D2e-5640476224379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.176960.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401598.10.0scarecrow-like protein 30
RefseqXP_024401607.10.0scarecrow-like protein 30
RefseqXP_024401617.10.0scarecrow-like protein 30
TrEMBLA0A2K1L1440.0A0A2K1L144_PHYPA; Uncharacterized protein
STRINGPP1S84_299V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-128SCARECROW-like 14