PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_11820V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 227aa    MW: 24228.6 Da    PI: 4.2309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_11820V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.8e-06201224123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        ++C+ C+++F++ s + +Hi   H
  Pp3c2_11820V3.2.p 201 HQCTGCDRTFTTESAMSQHIAAkH 224
                        79******************8777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0061201224IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993201226IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-4203225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280203224IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDFWGVEVPA GKPISCSPGE GMYLHVSQVA LGESKVKGGK GNDRVVLKVQ VDDSEVVLGT  60
LSEGKCDQMQ LDLVFDREFK VSHNSSSSSV YICGYRTEGP EEHGSEDEDE DEDEEDGALA  120
VATIPVESNG SKIIKEVTDK AATDVAKVVE KAMQDKSLKK QVVPDGDSDE EDDEEDSDDA  180
LKGTPTAPPP TPVSEKKAGP HQCTGCDRTF TTESAMSQHI AAKHKS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.69880.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368926.11e-100histone deacetylase HDT1-like isoform X1
RefseqXP_024368927.11e-100histone deacetylase HDT1-like isoform X2
RefseqXP_024368928.11e-100histone deacetylase HDT1-like isoform X3
TrEMBLA0A2K1L1602e-99A0A2K1L160_PHYPA; Uncharacterized protein
STRINGPP1S183_93V6.31e-100(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-26histone deacetylase 3