PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_13400V3.6.p

Common Name

PHYPADRAFT_70873

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 354aa MW: 40293.2 Da PI: 8.3217

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_13400V3.6.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.8	8.5e-11	87	172	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ + v + +++++e+ ++ rg+ + ++We+ ++ +e+ ++ kqC++k+++l+kr+k ++ ++ + ++ ++++fd+++ Pp3c2_13400V3.6.p 87 EWSARAVALFLDLYEEKYFEMDRGSFRFKDWEHLVERFnMEGEGGKTVKQCRDKLDSLKKRHKLERGRKAST-GAETCSWVWFDKMD 172 5*****************************966665599999****************99999985.666679*****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.9E-14	85	173	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MIEVRGWLGG SFHGLFLGSS GSQLSYKTIG ALDWVAMEDD RSKSPLPVSV PLPPPPPPMS 60 MLSTASLQPA ETERKPTVRN GEEKREEWSA RAVALFLDLY EEKYFEMDRG SFRFKDWEHL 120 VERFNMEGEG GKTVKQCRDK LDSLKKRHKL ERGRKASTGA ETCSWVWFDK MDGMFGDHVK 180 HQGVLFGPEL IDMRFTADKF RIAAGENIVT EEDHNRRLVG SWKEAKKVLQ DLPLSAEERG 240 KARTVLLEKK EEERLEYFVG DFEEVSHCLK LLVERASVHP PGSFRLSGMY KPVYHSPCTP 300 GVIQMDFAVA TDIQRRLEEI IADVISLKRR ATPDLQFFMP TAKNSKTKRK LSI*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MIEVRGWLGG SFHGLFLGSS GSQLSYKTIG ALDWVAMEDD RSKSPLPVSV PLPPPPPPMS  60
MLSTASLQPA ETERKPTVRN GEEKREEWSA RAVALFLDLY EEKYFEMDRG SFRFKDWEHL  120
VERFNMEGEG GKTVKQCRDK LDSLKKRHKL ERGRKASTGA ETCSWVWFDK MDGMFGDHVK  180
HQGVLFGPEL IDMRFTADKF RIAAGENIVT EEDHNRRLVG SWKEAKKVLQ DLPLSAEERG  240
KARTVLLEKK EEERLEYFVG DFEEVSHCLK LLVERASVHP PGSFRLSGMY KPVYHSPCTP  300
GVIQMDFAVA TDIQRRLEEI IADVISLKRR ATPDLQFFMP TAKNSKTKRK LSI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024399313.1	0.0	uncharacterized protein LOC112293746
TrEMBL	A9RUX0	0.0	A9RUX0_PHYPA; Uncharacterized protein
STRING	PP1S30_55V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	6e-22	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c2_13400V3.6.p
Entrez Gene	5921260

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]