PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_15730V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 251aa    MW: 27598.9 Da    PI: 6.6662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_15730V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-152967244
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44
                       +y+GVr+++ +g+W+AeI+dps+   r r +lg+++tae+Aa+
  Pp3c2_15730V3.2.p 29 KYRGVRQRP-WGKWAAEIQDPSK---RVRLWLGTYDTAEQAAQ 67
                       8********.**********975...6**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-102967IPR001471AP2/ERF domain
CDDcd000185.39E-252981No hitNo description
PROSITE profilePS5103217.3852967IPR001471AP2/ERF domain
SMARTSM003805.3E-262985IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-212980IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-162980IPR016177DNA-binding domain
PRINTSPR003671.9E-103041IPR001471AP2/ERF domain
PRINTSPR003671.9E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MATAKFTVLE KSQPKSASLV STNEGKPHKY RGVRQRPWGK WAAEIQDPSK RVRLWLGTYD  60
TAEQAAQEIH GPQAHTNFST SKKVEHITTT TSRSDVMSKK TMKKEASPKG SRPVKEPVTL  120
TPEVEGTSYS SKPMCPVQVK RITDGDEKTC VSRGKDEDMK MLGDAYDTIE VDLMSDDTLF  180
DNLSDDCGFF MCSSSSMDGS HGLPWSSLTV CEPSSNNFDA AVNAVTKSGE NGIKQRFQQN  240
QTLDLLTNCD *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024363732.10.0ethylene-responsive transcription factor CRF2-like
TrEMBLA9RQ186e-81A9RQ18_PHYPA; Predicted protein
STRINGPP1S7_481V6.11e-129(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-22cytokinin response factor 2