PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_16410V3.6.p
Common NamePHYPADRAFT_161207
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 515aa    MW: 55419.8 Da    PI: 5.9974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_16410V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.9e-12330372754
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+++N+++  Lr ++Pk      +K++ a+iL  A+eY+k+L
  Pp3c2_16410V3.6.p 330 MAERRRRKKLNDRLYMLRAMVPKI-----TKMDRASILGDAIEYLKEL 372
                        79*********************7.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.459323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16326395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-14329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9329372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.58E-13330376No hitNo description
Gene3DG3DSA:4.10.280.101.2E-15330391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.08E-7443484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MSSNSARNLE DLTWKAPTSS QNTTTDVVKD TAEKSNFDKG VLEEEWYTPE TSLMELSYSS  60
SYEMQDAPSN FSLLEPSLNF DSVNSHASFR LAPSINLGMS QLQGNGLLDN LACTGQGSSV  120
SLLSNIPPGG QLGHISTMDS YSQGIIFPGS SVGNIASSSI NARSVNLPPS FADAYSVSAL  180
NQNKPGEGGS GVSRNDFVLH HTSKQAKSCL PGQQTLFQKG AASRRSVAGG TVPSASKSPS  240
RVFTSASNDS SMDTRDKESP HTGNASRAEM LSGSDDPNDI RLDGDDYDPD ESGDGSGGPY  300
EVEEGAGNGA ENHGNSKIKG KRGLPAKNLM AERRRRKKLN DRLYMLRAMV PKITKMDRAS  360
ILGDAIEYLK ELLQRINDIH SELDAAKQEQ SRSMPSSPTP RSAHQGCPPK AKEECPMLPN  420
PETHVVEPPR VEVRKREGQA LNIHMFCARR PGLLLSTVRA LDALGLDVQQ AVISCFNGFA  480
LDLFRAEAKD ADVEPDEIKA VLLLTARRGM HPLQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331338ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.134340.0sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024364775.10.0transcription factor MYC2-like
RefseqXP_024364783.10.0transcription factor MYC2-like
RefseqXP_024364792.10.0transcription factor MYC2-like
RefseqXP_024364799.10.0transcription factor MYC2-like
RefseqXP_024364801.10.0transcription factor MYC2-like
RefseqXP_024364811.10.0transcription factor MYC2-like
RefseqXP_024364817.10.0transcription factor MYC2-like
RefseqXP_024364818.10.0transcription factor MYC2-like
RefseqXP_024364819.10.0transcription factor MYC2-like
TrEMBLA9RVD00.0A9RVD0_PHYPA; Uncharacterized protein
STRINGPP1S30_360V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.12e-64bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]