PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_1960V3.2.p
Common NamePHYPADRAFT_93515
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 610aa    MW: 68683.6 Da    PI: 9.3726
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_1960V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.6e-15481341298
                       HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       ++++l+lp++f++ehg+  ++s  ++l + +s   W++ l+++ ++     +++++GW+ Fv  ngL+egD ++F+l+  s+f   v +f+
  Pp3c2_1960V3.2.p  48 RTCQLTLPRQFVREHGNRIRKS--VVLLSgLSHGPWNLWLSICPSRPVmpeVTFSSGWRAFVAFNGLEEGDHLIFSLTAVSQF--QVYIFN 134
                       449************8775554..555555999*******664444336779999*********************9988999..888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-1730136IPR015300DNA-binding pseudobarrel domain
CDDcd100175.03E-1830134No hitNo description
SuperFamilySSF1019366.47E-1830140IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-831136IPR003340B3 DNA binding domain
PROSITE profilePS5086312.66137136IPR003340B3 DNA binding domain
PfamPF023627.6E-1248134IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-9232326IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.698232332IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-11232327IPR015300DNA-binding pseudobarrel domain
CDDcd100175.62E-9233326No hitNo description
SMARTSM010190.0019235330IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MTFSEPETVE TKLSCRDFKE MLHCLQCSIY FVQKLTASNV LGIYTRRRTC QLTLPRQFVR  60
EHGNRIRKSV VLLSGLSHGP WNLWLSICPS RPVMPEVTFS SGWRAFVAFN GLEEGDHLIF  120
SLTAVSQFQV YIFNGNGHQK KPQMLEASVK WSDGIEFPQK KILNQSLGYN LAEGNAGLVC  180
NVCPICARRR PLSEKEFAGT ASTDTCSQSS PHSSALNAQV SLEFSQKCRK YFPSFSKRIV  240
ARDVFRLEIP QHFAVKYGSQ LLDSIQLQGI HESSPVRNLQ TISHLDKARV RLYLAGAGWD  300
NFVTENMLRV GNELVFYLSA DSFFKVVDST VAYDSMFEKP AHSFKFVDIL PRNEEMDLKG  360
GNMKERMGNP HSATKEGTGT TETPQISTDE SSVRRFGDPM TGKKREKSSS GLHNLFLFFL  420
CKRYKHGTAE ALVKEIDIEV ADLNYISPRN STSCESHFYG PVTQPCILTL CAKLGYVCLE  480
LLRSKFVDGH LARIRVRIRF SNSHPQCKLM QRILQKSPLQ SCCSTEIYSE RHHARECSGE  540
ASQRKPLTSD PSFLKLLTLT RINHLVGSCK KSSFWNHSSG FGVEPRRSQF GAGKWPQASL  600
LPATWRGSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398304.10.0B3 domain-containing protein REM16-like
TrEMBLA0A2K1KZS30.0A0A2K1KZS3_PHYPA; Uncharacterized protein
STRINGPP1S243_74V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-08B3 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]