PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_21160V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

ZF-HD

Protein Properties

Length: 254aa MW: 27643.5 Da PI: 9.3082

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_21160V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100.6	1.1e-31	58	115	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +++rY+eC +NhA+s+Gg+avDGCgEfmp geegt+aalkCaAC+CHRnFHR+eve e Pp3c2_21160V3.1.p 58 KAIRYRECNRNHAISTGGYAVDGCGEFMPG-GEEGTVAALKCAACDCHRNFHRKEVEGE 115 5789***********************9.999*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-25	56	121	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	5.9E-30	60	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.0E-28	61	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.766	62	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.3E-31	175	251	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.0E-19	176	250	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.4E-26	189	245	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048574	Biological Process	long-day photoperiodism, flowering
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MESLVSYKID YTPMPITATF AGLHEFSKLK LFSNTGNRVT NMDEPRPMEA AGAKAKSKAI 60 RYRECNRNHA ISTGGYAVDG CGEFMPGGEE GTVAALKCAA CDCHRNFHRK EVEGEATCDC 120 QNIKRNDPRK RGLMAPGGPS QPGSSQQLAL PTPAQIISRV TAAPFLLGPG PTDSDDGDGG 180 LSGSPSTIKK RFRTRFNNEQ KEKMGVFAEK LGWKIQKHDE AAVQEFCAEV GVKRHVLKVW 240 MHNNKHTIGK KPP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-25	190	247	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024368812.1	0.0	zinc-finger homeodomain protein 2-like
Swissprot	Q6YXH5	4e-58	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A2K1L2G7	0.0	A0A2K1L2G7_PHYPA; Uncharacterized protein
STRING	PP1S165_109V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-54	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Pp3c2_21160V3.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]