PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_2200V3.2.p

Common Name

PHYPADRAFT_92543

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 301aa MW: 34221.7 Da PI: 8.798

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_2200V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.2	2.1e-29	56	109	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++l+Wt+eLHe+F++av++LGG++kAtPk+il++m+ g+t++hvkSHLQ+YR Pp3c2_2200V3.2.p 56 QKLKWTQELHECFLRAVDHLGGQNKATPKKILHHMNRSGITIAHVKSHLQMYRR 109 89***************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.607	48	112	IPR017930	Myb domain
SuperFamily	SSF46689	6.63E-15	53	108	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-25	55	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-24	56	109	IPR006447	Myb domain, plants
Pfam	PF00249	9.7E-10	57	108	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MPSVSDSSHG RDEIGRRLCQ RAILPQSTQS INADDSSDEF KRYSCNVRPN LCTSTQKLKW 60 TQELHECFLR AVDHLGGQNK ATPKKILHHM NRSGITIAHV KSHLQMYRRG KISACRVFGC 120 ESWTDEQWRG KLEFEPAAMA LIQLKEERIS HFRAVSADLP KDSHGNEALQ LHLQQISERK 180 LHMQHVETRA FAPVLGLYDE YPRSIKEQEV SQKREPGQTS TCRPDSCSAP SSRSFLGGTT 240 KDSLVETTYS LGGGEEEKSR RGWTWIPRRT PDHAIQVYDS PTLFSKRKIL AFILNFQLCE 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-13	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-13	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-13	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-13	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-13	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-13	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-13	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-13	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-13	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K1KZT3	0.0	A0A2K1KZT3_PHYPA; Uncharacterized protein
STRING	PP1S226_110V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	4e-20	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c2_2200V3.2.p
Entrez Gene	5940994

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]