PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_23590V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 749aa    MW: 78771.9 Da    PI: 8.5653
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_23590V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.8e-32372429260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkgse+prsYY+Ct+ +C +kkkvers+ d++v+ei+Y+g+Hnh+k
  Pp3c2_23590V3.1.p 372 EDGYNWRKYGQKHVKGSEYPRSYYKCTHINCLMKKKVERSR-DGQVTEIIYKGDHNHPK 429
                        7****************************************.***************85 PP
2WRKY105.82.2e-33550608159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct  gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Pp3c2_23590V3.1.p 550 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNVGCPVRKHVERASNDPKAVITTYEGKHNHD 608
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-28365430IPR003657WRKY domain
SuperFamilySSF1182905.49E-25369430IPR003657WRKY domain
SMARTSM007749.6E-35371429IPR003657WRKY domain
PfamPF031063.4E-24372428IPR003657WRKY domain
PROSITE profilePS5081123.812372430IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-38535610IPR003657WRKY domain
SuperFamilySSF1182908.11E-30542610IPR003657WRKY domain
PROSITE profilePS5081138.469545610IPR003657WRKY domain
SMARTSM007745.8E-40550609IPR003657WRKY domain
PfamPF031061.9E-26551608IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015979Biological Processphotosynthesis
GO:0042742Biological Processdefense response to bacterium
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0009543Cellular Componentchloroplast thylakoid lumen
GO:0009570Cellular Componentchloroplast stroma
GO:0009654Cellular Componentphotosystem II oxygen evolving complex
GO:0009941Cellular Componentchloroplast envelope
GO:0019898Cellular Componentextrinsic component of membrane
GO:0048046Cellular Componentapoplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0008266Molecular Functionpoly(U) RNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MEGEQGGAES GGGGGGNGIL RKPTPSRPQA TMVVGAGEHG IGFKPLEGSM SSMVSGFLAD  60
QEGGTEENRS FSHLLAGAIN SPTPDSVDRS VDGRSTSMES GTNGGTGNHQ AEATDGRGSS  120
PGTAGGSFAE RLAARGAANK VADSGGHPSS GRPPNNNRFK VLQPSRIPIP RQGAYLTIPP  180
GLSPTTLFDS SPVLVSTSQS EPSPTTGTYP MPPFFNGSLT RPVAKVGEVS KERSAEQTFV  240
FKPFLHSVPR PPLPPSLSTF GGTSQHQPVA IPQLHEAPTQ QPQPVTSSST LSASVVPPAP  300
PFLSQAPSST AFPVAVPVTL DVQPLQARVV LQSQSTAIDS QPSQPTASHS SQGSEQQAPP  360
AAVSTIVDRP SEDGYNWRKY GQKHVKGSEY PRSYYKCTHI NCLMKKKVER SRDGQVTEII  420
YKGDHNHPKP QPTRRLALSG AHLISDSSGA GFASMVKNEG GNTERDSSDV SKGRTGSASG  480
ATGTTDPSSP STSDDEGGAG SKHSTEDGDD DEPDSKRRKT DKKSKDPVPP PRMIREPRVV  540
VQTTSDVDIL DDGYRWRKYG QKVVKGNPHP RSYYKCTNVG CPVRKHVERA SNDPKAVITT  600
YEGKHNHDVP AARNVGHDVA MQTAAPVAAT ARSLQDQGIS FGNSFGQPPE DSASRWNRGS  660
GDVELGMSVG LGPRVQGARE QGPLAATAVS LAASIGHPSF DDARAPLQSR EPFMSGFGTR  720
PKQEQPEPTT QTNLMNSNSS LHHSMAPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-38372611878Probable WRKY transcription factor 4
2lex_A3e-38372611878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.111700.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8896230.0DQ889623.1 Physcomitrella patens WRKY transcription factor 4 (WRKY4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368161.10.0WRKY transcription factor SUSIBA2-like isoform X3
TrEMBLA0A2K1L2S70.0A0A2K1L2S7_PHYPA; Uncharacterized protein
STRINGPP1S135_80V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.19e-79WRKY DNA-binding protein 3