PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_23660V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family RAV
Protein Properties Length: 952aa    MW: 104023 Da    PI: 7.127
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_23660V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.3e-14259307155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+++GV    ++grW A+I++      ++r++lg+f t+eeAa+a++ a+ k++g
  Pp3c2_23660V3.2.p 259 SQFRGVV-PQSNGRWGAQIYEK-----HQRIWLGTFNTEEEAARAYDTAAIKFRG 307
                        6899996.6779*********3.....5************************998 PP
2B398.63.9e-31424524199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+ tpsdv+k++rlv+pk++ae++        +++ ++tl++ed sg+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v F++  
  Pp3c2_23660V3.2.p 424 FDKAVTPSDVGKLNRLVIPKQHAERCfpldlsA-NSP-GQTLSFEDVSGKHWRFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDIVSFERG- 512
                        89***************************9853.433.459************************************************43. PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                         ++ el++ ++rk
  Pp3c2_23660V3.2.p 513 -RNHELYIDFRRK 524
                        .667779999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.19E-25259317No hitNo description
SuperFamilySSF541711.18E-17259315IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-21260315IPR001471AP2/ERF domain
PROSITE profilePS5103220.521260315IPR001471AP2/ERF domain
SMARTSM003801.1E-30260321IPR001471AP2/ERF domain
PRINTSPR003679.6E-5261272IPR001471AP2/ERF domain
PfamPF008477.9E-8261307IPR001471AP2/ERF domain
PRINTSPR003679.6E-5281297IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.7E-42415525IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.09E-30420524IPR015300DNA-binding pseudobarrel domain
CDDcd100176.94E-27422523No hitNo description
PROSITE profilePS5086315.679424525IPR003340B3 DNA binding domain
SMARTSM010191.4E-28424525IPR003340B3 DNA binding domain
PfamPF023626.8E-28424524IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 952 aa     Download sequence    Send to blast
MCLNAKDEKA VGMWSKPASR SSSEPHHGPD VTLRLNNFDT LVASSSDSDV SSFKIVECPS  60
QGREEASTSV VIRETNPASP IPKFYTIEEK TAMLGVAEAA AANTLQVHGI PRFQRHIDHD  120
RSRLHDSSML RTSGKDSENC FRADAEEHRA YVASNLESFG ERSHPLDLLG SRLEAEFSRG  180
ANLKQWPLGS RNVGQRCGSG ELERTQSGPS AFLGSGSLDT EQRGSLERTH SGPSFSGSGD  240
SEYGDDRGRE QSNSKLPSSQ FRGVVPQSNG RWGAQIYEKH QRIWLGTFNT EEEAARAYDT  300
AAIKFRGRDA MTNFRPVTDS EYESEFLRSF SKEQIVEMLR RHTYDEELDQ CKKVFNMDAA  360
ANPVSARRRV LEMCRSSNPG TRLSVGSFSL LQNTFSADTS TTLAPPNLPR DEPRESSPTR  420
EHLFDKAVTP SDVGKLNRLV IPKQHAERCF PLDLSANSPG QTLSFEDVSG KHWRFRYSYW  480
NSSQSYVLTK GWSRFVKEKK LDAGDIVSFE RGRNHELYID FRRKQITAGG TSTSDRSSFR  540
SAWSGPCNNA YAPSNGPVSP LNSRMWQPFS FSVPHVTVTS SGIQPSSMYG SIYNQMMQSA  600
RGTSAASGDL GSVQDSAIPS MAGSCLNLDL QHSPLKCHAA TEDFILHIDR PLRQSADMDG  660
GSNIHDRSLV ASSSSTSSQS EEAPSTSSGT RLFGVDLERA APLACKVSPL QSIPSFTSSA  720
LQSKLSEGHE SSQGNLKTIH DGGNIPPSAS LSALTSGEFL SFRLGNAFKS LQCKHPVEQS  780
SPENGGAPVR LSLQASTSSS SGHRGSSPLK STAMTEGEDP KARSSTESVA SALDSNSSRS  840
SPMLLEKRKR ENSNRDYMQG CSDQADGAAN VPLTLAHSEF RSSLEQARHA WHKHEDDASA  900
EVQTSVKRHC SPIQASLLRQ GSGTTEQSDF LPKPDLVQEK QKPQYDSSNL R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-514205244113B3 domain-containing transcription factor NGA1
5os9_B2e-514205244113B3 domain-containing transcription factor NGA1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369136.10.0uncharacterized protein LOC112279179 isoform X1
RefseqXP_024369137.10.0uncharacterized protein LOC112279179 isoform X1
TrEMBLA0A2K1L2S10.0A0A2K1L2S1_PHYPA; Uncharacterized protein
STRINGPP1S135_69V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-90related to ABI3/VP1 1