PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_24140V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 605aa    MW: 64754.6 Da    PI: 6.1807
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_24140V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.2e-09102126226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C ++++t tC++G +C++ H+
  Pp3c2_24140V3.1.p 102 GQKVCAYYMATRTCSFGVTCRYDHP 126
                        6789********************8 PP
2zf-CCCH39.31.1e-12158182327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++ C +f++tG+C+yG++C+F+H++
  Pp3c2_24140V3.1.p 158 EPDCAYFMKTGECRYGPQCRFNHPK 182
                        689********************96 PP
3zf-CCCH22.81.6e-07222244527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +C f+ +tG Ck+G+ C+++H++
  Pp3c2_24140V3.1.p 222 NCVFYGKTGSCKHGPACRYNHPE 244
                        79*******************96 PP
4zf-CCCH35.81.4e-11469495127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C f+ +tG+C++G++CkF+H+p
  Pp3c2_24140V3.1.p 469 PGEPDCTFYIKTGECSFGATCKFHHPP 495
                        5789*********************97 PP
5zf-CCCH33.28.9e-11525549327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C ++++tG Ck+G +Ck+ H+p
  Pp3c2_24140V3.1.p 525 EAPCAYYMKTGACKFGQTCKYDHPP 549
                        589********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.015100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.202100128IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-7102126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413155183IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6155182IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10158182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6160186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-6161183IPR000571Zinc finger, CCCH-type
SMARTSM003560.026217244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.427217245IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4222244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99468496IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5468495IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8470495IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5472497IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4474494IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812522550IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4522549IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8525549IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5526550IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4527547IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MTAASHQVVY AISTPPHGVV HYEYYTQQVP QTTTATPFAA FAQYSSSAPP PSGAIAMDQS  60
ADGAAKRLSD GVTDDMTGPN KKPRSNSSGV SGENGLYPQR PGQKVCAYYM ATRTCSFGVT  120
CRYDHPAWLP PGGIPSWKEV TAVGTPVDPC LLPQRPAEPD CAYFMKTGEC RYGPQCRFNH  180
PKEKLEPSNT DDQYSAASSA AFGNPATAYN TNGLPLRPGE GNCVFYGKTG SCKHGPACRY  240
NHPEIVFPAG GRTGQTLQPQ QAVYVQPPQQ PNSQYQMVQE AKLYMQATPD YSYPATTYQS  300
TTPTYTTAPT AYPVATTYST AAPAYASPAA PYTGQQVITE YVYPGGAMMQ VYPAGSTTQG  360
YPPETPTQSY SQAGQQPQCQ EDYTYATQQV SRNGTEYMYS TEQPGQGASD QYATTVYTSE  420
ASGQPSTGDY ACTAAHNSQE YMYAAAQAYH QNVTSVYATP MSLPHPQRPG EPDCTFYIKT  480
GECSFGATCK FHHPPDRIPT GIPKPAKNQG LVKLSLAGLP RRETEAPCAY YMKTGACKFG  540
QTCKYDHPPP QEIIAKAVEQ ARGEIPVSCD VSMPGSNESD SQDATPLPPG TDAPAVTAAC  600
ASST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368798.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X7
TrEMBLA0A2K1L2U70.0A0A2K1L2U7_PHYPA; Uncharacterized protein
STRINGPP1S86_197V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-41floral homeotic protein (HUA1)