PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_25760V3.3.p

Common Name

PHYPADRAFT_166576

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

ERF

Protein Properties

Length: 198aa MW: 22951.8 Da PI: 9.7001

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_25760V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38	4.1e-12	49	93	2	48
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 ++kG+r+++ gr+ +eIr + ++++++lg+f taeeAa+a +a Pp3c2_25760V3.3.p 49 RFKGIRYRPELGRYISEIRPA---QpRKRKIWLGTFKTAEEAARAFDA 93 69*************9982...3567***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	14.842	49	110	IPR001471	AP2/ERF domain
SMART	SM00380	7.2E-8	49	113	IPR001471	AP2/ERF domain
Pfam	PF00847	5.6E-7	49	92	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-11	49	106	IPR016177	DNA-binding domain
CDD	cd00018	9.54E-13	49	109	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.9E-17	49	108	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MQGEATVAIK QYMATSGRYG DDYGVVCKRS PPGRAKFLEF RHDVVQQERF KGIRYRPELG 60 RYISEIRPAQ PRKRKIWLGT FKTAEEAARA FDAGIFYTKK PVEYNFEDSP SILEPLPENL 120 SPEQEHIEIQ KRAKAAAARV EPSQSERPHP GTYAKFSDSY SSQKRSKRYF NQDNEYCDAQ 180 VHRPPREIQF WEVLNRS*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC159398	0.0	AC159398.2 Physcomitrella patens clone JGIASYB-5K21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024401788.1	1e-108	ethylene-responsive transcription factor RAP2-9-like
TrEMBL	A9SU62	1e-142	A9SU62_PHYPA; Predicted protein
STRING	PP1S119_43V6.1	1e-145	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25470.1	1e-15	C-repeat/DRE binding factor 2

Link Out ? help Back to Top
Phytozome	Pp3c2_25760V3.3.p
Entrez Gene	5933151

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]