PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_25760V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 225aa    MW: 26046.3 Da    PI: 9.0951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_25760V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.1e-1276120248
                AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 
                        ++kG+r+++  gr+ +eIr     + ++++++lg+f taeeAa+a +a
  Pp3c2_25760V3.4.p  76 RFKGIRYRPELGRYISEIRPA---QpRKRKIWLGTFKTAEEAARAFDA 120
                        69***************9982...3567*****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.86E-1276136No hitNo description
PROSITE profilePS5103214.84276137IPR001471AP2/ERF domain
SMARTSM003807.2E-876140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-1776135IPR001471AP2/ERF domain
PfamPF008477.0E-776119IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1176133IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
CDDEELIHQF GVAHLQVAGE RCCARRRMQG EATVAIKQYM ATSGRYGDDY GVVCKRSPPG  60
RAKFLEFRHD VVQQERFKGI RYRPELGRYI SEIRPAQPRK RKIWLGTFKT AEEAARAFDA  120
GIFYTKKPVE YNFEDSPSIL EPLPENLSPE QEHIEIQKRA KAAAARVEPS QSERPHPGTY  180
AKFSDSYSSQ KRSKRYFNQD NEYCDAQVHR PPREIQFWEV LNRS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1593980.0AC159398.2 Physcomitrella patens clone JGIASYB-5K21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401788.11e-107ethylene-responsive transcription factor RAP2-9-like
TrEMBLA9SU621e-141A9SU62_PHYPA; Predicted protein
STRINGPP1S119_43V6.11e-144(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.19e-15C-repeat/DRE binding factor 2