PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_26970V3.4.p
Common NamePHYPADRAFT_160508
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 528aa    MW: 58398.8 Da    PI: 9.124
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_26970V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1353.1e-11323377559
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                        k ++r   NR +A+rsR RK+++i eLe kv +Le+e  +L  ++  +  e a l
  Pp3c2_26970V3.4.p 323 KQAKRILVNRQSAQRSRVRKLQYISELEMKVIVLESEVASLSPKVGYYDHERALL 377
                        8899999*******************************99998888777776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-11319383IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.68321384IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.64E-11323377No hitNo description
PfamPF001704.5E-10323377IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.0E-13323390No hitNo description
CDDcd147037.38E-23325375No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MDSVSTGAYD VQSVNWAYPM KNPTHLPPKS PHGYSMFSSS SVFENSGVFS LPQSQPSRGG  60
EHRRSPSAGY IPQGQPTWNL DRFGSPDGVV VLKKCSHRRS SSDSVAFVDN SYHYMNNLEN  120
VTEEDEFVLQ EPSLPVYRTN NRKGLKANID SGDHIFPYKL PASPWSYPEK SGRGDHNLIS  180
YRPDKEHVSR IRDDEPFQRH QPRHENLVGC NHVGSNLAKS GSPENGRGLG KASKHVTLAI  240
PSPSGDSPLG SRRRAHNWST TATFENPSTA SESNSHSDDS NDDTRTKSYE RLRSDLEVGS  300
EEGGDASVQF HDDHTSSEKV DPKQAKRILV NRQSAQRSRV RKLQYISELE MKVIVLESEV  360
ASLSPKVGYY DHERALLNAE NVQLKQKLAA LTQTQLLKEA RSESLKTEVH RLRQLYNQQQ  420
QQQPQHLRQQ RPACPESLEL PLQFFSKLDL GPSIFKPTSL NANTSGAKPS KGGSSLYSSQ  480
VILSPCGKTI RRPSSYTIPP SCMTPGGKAF DGGMMGSPGA SFMVHNS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.59160.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368462.10.0uncharacterized protein LOC112278846
RefseqXP_024368463.10.0uncharacterized protein LOC112278846
RefseqXP_024368464.10.0uncharacterized protein LOC112278846
TrEMBLA0A2K1L3570.0A0A2K1L357_PHYPA; Uncharacterized protein
STRINGPP1S22_364V6.30.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.21e-23bZIP family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]