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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pp3c2_30010V3.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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| Family |
E2F/DP |
| Protein Properties |
Length: 469aa MW: 51532.9 Da PI: 4.6496 |
| Description |
E2F/DP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c2_30010V3.1.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | E2F_TDP | 86.5 | 2e-27 | 142 | 207 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
r+++sL+llt+kf++l++++e+g+++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg
Pp3c2_30010V3.1.p 142 RYDSSLGLLTKKFIDLIKQAEDGVLDLNKAADTL---HV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 207
6899******************************...99..****************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 469 aa
Download sequence Send
to blast |
MEILRPDALK IASYPGFGSD VTMPHQQAPT WMVMQSGKPK IDPMEINDLL YANVGVDDVP 60
LTLANGFEMK RRNECEEHHV EMNGWNGYAN SDLSPAPTPT GPRGRASRPK TVKQTKNGPQ 120
TPGPSGIGSP TSSAPTPTST CRYDSSLGLL TKKFIDLIKQ AEDGVLDLNK AADTLHVQKR 180
RIYDITNVLE GIGLIEKKLK NRIRWKGLGM VRTTEGKDDA VGLQVEVEDL RNEEKKLDES 240
ISEMRERLRS LSEDDHNKQW LYVTEDDIKN LPCFQNETLI AIKAPLGTTL EVPDPDEAVE 300
YPHRRFQILL RSTMGPIDVY LVSRFEGRTE VPMEPLPGSQ EAGPSTTANA MDHQGNMAMV 360
PEVGYGLSDL VPPANHEAAS QTSEPTSSHP DFVGGIMRIA PAEGNTDSDY WLLSDAGVGI 420
SDMWRSDPSN AMWDEVVRLN TEFGIENIGS PRPHTPPSSN ALEVDPVS*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant in early S phase. Decreased expression during the passage into G2. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543}. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in the shoot apical meristem, emerging leaf primordia, and vascular tissues of young leaf primordia. Expressed in flowers, in epidermis and cortex of hypocotyls, and at lower levels in leaves. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11889041}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB547339 | 0.0 | AB547339.1 Physcomitrella patens E2F;3 mRNA for E2F transcription factor;3, complete cds. |
