PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_32150V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 427aa    MW: 47458.4 Da    PI: 8.291
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_32150V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.72.3e-28165224160
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        ++Dgy+WrKYGqK+v +s++prsYY+Ct+agC+v+k+v r+ ed  +v+  YegeH+h+k
  Pp3c2_32150V3.2.p 165 VEDGYKWRKYGQKTVLSSPYPRSYYKCTTAGCRVRKQVSRCVEDRGLVIASYEGEHHHPK 224
                        58********************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-29151224IPR003657WRKY domain
SuperFamilySSF1182908.37E-26159224IPR003657WRKY domain
PROSITE profilePS5081128.644160225IPR003657WRKY domain
SMARTSM007741.9E-30165224IPR003657WRKY domain
PfamPF031061.6E-22166223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MMEKSGPDEI QEVVAPSFED NEDLAALVQQ YFESIISPSG SLKTEGFPKY DSFCSSPCGQ  60
ICCRRGSNGG TLTHDSSSLS PPSSCVSDPS RTTETGSLKP ACFRDDECKD GMKLPHDGEG  120
GDDAPLDDGP LIERKNFSWA KKKKGLKKVT DPRHIVKRRT DLDMVEDGYK WRKYGQKTVL  180
SSPYPRSYYK CTTAGCRVRK QVSRCVEDRG LVIASYEGEH HHPKISQQTC SSKTSHSQNT  240
AKILLDSLNP HNNRQAKQAG YSLPNLLPIN TILPYPDHFG YLMQRRWPIF DPHQLQPPSV  300
LDSMNMMMVY QVMKLKQELQ ARTQEFMNFA TQGSGISDLL AMNLLNVHPE VYPQARAEPG  360
LSLVDLMRLA SRTHWDQSGQ KSSQPEPSSN PRCRRSNTIR TTAPIPGLST VVSRRQSGGS  420
SNDSDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-21156222874Probable WRKY transcription factor 4
2lex_A1e-21156222874Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367828.10.0uncharacterized protein LOC112278489
TrEMBLA0A2K1L3Z00.0A0A2K1L3Z0_PHYPA; Uncharacterized protein
STRINGPP1S426_27V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.14e-26WRKY DNA-binding protein 4