PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_32160V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 455aa    MW: 49993.4 Da    PI: 6.912
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_32160V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30192249259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgy+WrKYGqK+vk+s +pr+YY+Ct+a+Cpv+k+ver+++dp+ v +tY g+H+h+
  Pp3c2_32160V3.1.p 192 DDGYKWRKYGQKPVKNSVHPRNYYKCTTANCPVRKRVERCTDDPSHVLTTYDGTHTHP 249
                        8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-32178250IPR003657WRKY domain
SuperFamilySSF1182902.09E-28183249IPR003657WRKY domain
PROSITE profilePS5081128.977186251IPR003657WRKY domain
SMARTSM007749.8E-34191250IPR003657WRKY domain
PfamPF031062.4E-24192249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MLRGGTIVSK APGLDAFEGS SHFTQYQGLV RQESLNLITA QIARDHEIER YSQEELRGFR  60
DEMERFLFDQ SDSLTLPNLE PQYFGTSGTS GTNPDPLGYA DTPVPEVSSL SIGPDTEVDL  120
SDASTRDSQG ASEVSSPGSK RKLEGVSADH AGDPNYDGNS PRIRQRVQSS PAGRSPQSRI  180
AIQTRTEVDV IDDGYKWRKY GQKPVKNSVH PRNYYKCTTA NCPVRKRVER CTDDPSHVLT  240
TYDGTHTHPE TSPQTTDGSN PPRNVGCNLE RMVDEDVSTS SAPVTPLGPP RVPSNYWPVQ  300
PNGLANLLLA GSQLPDQRRW SHPAAQQIFR LQFQTQYPLL FNMLNLMRTF PRARPPLVDP  360
RMSPRLDSRA LHAAQSYAMR TASGHINQDV VGPASAKALD PQNSSSGLGP SSSVPVSFSR  420
AQQRLLWMRQ LMGESILGEQ RTGQHPASDS TTDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-24181248774Probable WRKY transcription factor 4
2lex_A7e-24181248774Probable WRKY transcription factor 4
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367797.10.0probable WRKY transcription factor 20 isoform X2
TrEMBLA0A2K1L3Y00.0A0A2K1L3Y0_PHYPA; Uncharacterized protein
STRINGPP1S426_30V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.14e-32WRKY DNA-binding protein 50