PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_32160V3.5.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

WRKY

Protein Properties

Length: 472aa MW: 51882.5 Da PI: 7.1106

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_32160V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.3e-30	209	266	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK+vk+s +pr+YY+Ct+a+Cpv+k+ver+++dp+ v +tY g+H+h+ Pp3c2_32160V3.5.p 209 DDGYKWRKYGQKPVKNSVHPRNYYKCTTANCPVRKRVERCTDDPSHVLTTYDGTHTHP 266 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-32	195	267	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-28	200	266	IPR003657	WRKY domain
PROSITE profile	PS50811	28.977	203	268	IPR003657	WRKY domain
SMART	SM00774	9.8E-34	208	267	IPR003657	WRKY domain
Pfam	PF03106	2.5E-24	209	266	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MLRGGTIVSK APGLDAFEGS SHFTQYQGLV RQESLNLITA QIARDHEIER YSQEELRGFR 60 DEMERFLFDQ SDSLTLPNLE PQYFGTSGTS GTNPDPLGYA DTPVPEVSSL SIGPDTEVDL 120 SDASTRDSQG ASEVSSPGSK RKLEGVSADH AGDPNYDGNS PRIRQRVQSS NDTLQEYKGK 180 GLKVINSPAG RSPQSRIAIQ TRTEVDVIDD GYKWRKYGQK PVKNSVHPRN YYKCTTANCP 240 VRKRVERCTD DPSHVLTTYD GTHTHPETSP QTTDGSNPPR NVGCNLERMV DEDVSTSSAP 300 VTPLGPPRVP SNYWPVQPNG LANLLLAGSQ LPDQRRWSHP AAQQIFRLQF QTQYPLLFNM 360 LNLMRTFPRA RPPLVDPRMS PRLDSRALHA AQSYAMRTAS GHINQDVVGP ASAKALDPQN 420 SSSGLGPSSS VPVSFSRAQQ RLLWMRQLMG ESILGEQRTG QHPASDSTTD N*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MLRGGTIVSK APGLDAFEGS SHFTQYQGLV RQESLNLITA QIARDHEIER YSQEELRGFR  60
DEMERFLFDQ SDSLTLPNLE PQYFGTSGTS GTNPDPLGYA DTPVPEVSSL SIGPDTEVDL  120
SDASTRDSQG ASEVSSPGSK RKLEGVSADH AGDPNYDGNS PRIRQRVQSS NDTLQEYKGK  180
GLKVINSPAG RSPQSRIAIQ TRTEVDVIDD GYKWRKYGQK PVKNSVHPRN YYKCTTANCP  240
VRKRVERCTD DPSHVLTTYD GTHTHPETSP QTTDGSNPPR NVGCNLERMV DEDVSTSSAP  300
VTPLGPPRVP SNYWPVQPNG LANLLLAGSQ LPDQRRWSHP AAQQIFRLQF QTQYPLLFNM  360
LNLMRTFPRA RPPLVDPRMS PRLDSRALHA AQSYAMRTAS GHINQDVVGP ASAKALDPQN  420
SSSGLGPSSS VPVSFSRAQQ RLLWMRQLMG ESILGEQRTG QHPASDSTTD N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-24	198	265	7	74	Probable WRKY transcription factor 4
2lex_A	8e-24	198	265	7	74	Probable WRKY transcription factor 4

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024367814.1	0.0	uncharacterized protein LOC112278470 isoform X4
TrEMBL	A0A2K1L3Y0	0.0	A0A2K1L3Y0_PHYPA; Uncharacterized protein
STRING	PP1S426_30V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	5e-32	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	Pp3c2_32160V3.5.p