PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_32160V3.9.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 568aa    MW: 62068.1 Da    PI: 5.2451
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_32160V3.9.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.6e-30305362259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgy+WrKYGqK+vk+s +pr+YY+Ct+a+Cpv+k+ver+++dp+ v +tY g+H+h+
  Pp3c2_32160V3.9.p 305 DDGYKWRKYGQKPVKNSVHPRNYYKCTTANCPVRKRVERCTDDPSHVLTTYDGTHTHP 362
                        8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-32291363IPR003657WRKY domain
SuperFamilySSF1182903.01E-28296362IPR003657WRKY domain
PROSITE profilePS5081128.977299364IPR003657WRKY domain
SMARTSM007749.8E-34304363IPR003657WRKY domain
PfamPF031063.2E-24305362IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MDPEGRGSAG SGSGQPEKDV PGVGSGTEDE GFSGGGFVSS PQRGSTSSFA DAAPSFADMD  60
STWQMLGSAE FDQPEAHAPW WDNRQQRYQQ RNDLSNIEQL AGSSSFPRDL EELPNACQLR  120
GHVAPGLDAF EGSSHFTQYQ GLVRQESLNL ITAQIARDHE IERYSQEELR GFRDEMERFL  180
FDQSDSLTLP NLEPQYFGTS GTSGTNPDPL GYADTPVPEV SSLSIGPDTE VDLSDASTRD  240
SQGASEVSSP GSKRKLEGVS ADHAGDPNYD GNSPRIRQRV QSSPAGRSPQ SRIAIQTRTE  300
VDVIDDGYKW RKYGQKPVKN SVHPRNYYKC TTANCPVRKR VERCTDDPSH VLTTYDGTHT  360
HPETSPQTTD GSNPPRNVGC NLERMVDEDV STSSAPVTPL GPPRVPSNYW PVQPNGLANL  420
LLAGSQLPDQ RRWSHPAAQQ IFRLQFQTQY PLLFNMLNLM RTFPRARPPL VDPRMSPRLD  480
SRALHAAQSY AMRTASGHIN QDVVGPASAK ALDPQNSSSG LGPSSSVPVS FSRAQQRLLW  540
MRQLMGESIL GEQRTGQHPA SDSTTDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-23294361774Probable WRKY transcription factor 4
2lex_A2e-23294361774Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367797.10.0probable WRKY transcription factor 20 isoform X2
TrEMBLA0A2K1L3Y00.0A0A2K1L3Y0_PHYPA; Uncharacterized protein
STRINGPP1S426_30V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-31WRKY DNA-binding protein 50