PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_32300V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 232aa    MW: 26109.4 Da    PI: 7.5693
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_32300V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.4e-08137188242
                        SSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcks 42 
                        ++WT eE e l++av +  +             +W+  a++++ gRt+ +c+ 
  Pp3c2_32300V3.1.p 137 KNWTDEETEVLLEAVPRKTNVksrfdksdgselSWEDMANKLP-GRTGDECRM 188
                        68****************977**********************.*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-9130197IPR009057Homeodomain-like
PROSITE profilePS500908.2131194IPR017877Myb-like domain
SuperFamilySSF466894.79E-6134189IPR009057Homeodomain-like
SMARTSM007174.1E-4135196IPR001005SANT/Myb domain
PfamPF138371.7E-9137215No hitNo description
CDDcd001673.01E-5138193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
METCDVMVSE WHHGFRHGAS HQDPIYAYDF SSLNLPILLL CCGTVAIPTL TSRSYDENQK  60
LDVKPRGSPE AQFAQEPGPI SLTKMHAKGQ VIELQHEGSD GKSLSQRHSD DASATGENDG  120
VANGETRGEK KRKKRSKNWT DEETEVLLEA VPRKTNVKSR FDKSDGSELS WEDMANKLPG  180
RTGDECRMRM DMLTKSYKAI KTYCENQKKK FRLLTKVDFE DIKLATHFPK S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129133KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401778.12e-40uncharacterized protein LOC112294978
TrEMBLA0A2K1L3Z41e-174A0A2K1L3Z4_PHYPA; Uncharacterized protein
STRINGPP1S426_45V6.12e-96(Physcomitrella patens)