PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_32530V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NAC

Protein Properties

Length: 292aa MW: 33102.6 Da PI: 9.5775

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_32530V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	86.6	4.6e-27	40	119	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+ ++ + Fs++ kky+tg+r+nrat+ g+W+atg+dk++++k +++l+g++ktLvfy+grap+g ktdW+mhe+rl Pp3c2_32530V3.1.p 40 HVQLLKSTTISFSRKGKKYPTGTRANRATTMGFWNATGRDKPIHTKlNQTLIGMRKTLVFYQGRAPHGIKTDWIMHEFRL 119 44445567789********************************988999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	30.975	1	140	IPR003441	NAC domain
SuperFamily	SSF101941	8.63E-30	50	140	IPR003441	NAC domain
Pfam	PF02365	2.0E-10	51	119	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MVVDRWRNFE LGPVWAPREQ ETPPPPLPLP RCSRRVLPTH VQLLKSTTIS FSRKGKKYPT 60 GTRANRATTM GFWNATGRDK PIHTKLNQTL IGMRKTLVFY QGRAPHGIKT DWIMHEFRLY 120 DGSERPTHDG GWVVCRLFKK NKNLKMEMQQ ERAISYEEHM GALSPEAAGS PNVLPGDDQL 180 TFLEKSSRVK FLVAVTARSW TTKNQSRDPS TTTYFENRSL SLPLGSWSSA EDTALRVIKE 240 QADDVCFEDE MLRLGLYGID HDRDCGGESF NDNIAGQECF NPKLQSTKSP K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-23	36	143	61	168	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-23	36	143	61	168	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-23	36	143	61	168	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-23	36	143	61	168	NO APICAL MERISTEM PROTEIN
3swm_A	4e-23	36	143	64	171	NAC domain-containing protein 19
3swm_B	4e-23	36	143	64	171	NAC domain-containing protein 19
3swm_C	4e-23	36	143	64	171	NAC domain-containing protein 19
3swm_D	4e-23	36	143	64	171	NAC domain-containing protein 19
3swp_A	4e-23	36	143	64	171	NAC domain-containing protein 19
3swp_B	4e-23	36	143	64	171	NAC domain-containing protein 19
3swp_C	4e-23	36	143	64	171	NAC domain-containing protein 19
3swp_D	4e-23	36	143	64	171	NAC domain-containing protein 19
4dul_A	4e-23	36	143	61	168	NAC domain-containing protein 19
4dul_B	4e-23	36	143	61	168	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.12542	1e-104	protonema

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB898088	0.0	AB898088.1 Physcomitrella patens PpVNS8 mRNA for NAC transcription factor PpVNS8, complete cds, ecotype: Gransden 2004.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024390072.1	2e-89	NAC domain-containing protein 30-like isoform X1
Refseq	XP_024390073.1	6e-90	NAC domain-containing protein 30-like isoform X2
Refseq	XP_024390074.1	6e-90	NAC domain-containing protein 30-like isoform X2
Refseq	XP_024390075.1	6e-90	NAC domain-containing protein 30-like isoform X2
Refseq	XP_024390076.1	6e-90	NAC domain-containing protein 30-like isoform X2
TrEMBL	A0A2K1L3Z8	0.0	A0A2K1L3Z8_PHYPA; Uncharacterized protein
STRING	PP1S304_12V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62380.1	2e-37	NAC-domain protein 101

Link Out ? help Back to Top
Phytozome	Pp3c2_32530V3.1.p