PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_36690V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 189aa    MW: 21014.8 Da    PI: 5.028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_36690V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15e-19757256
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       +y+GVr ++ +g+Wv+eIr+p +   +kr++lg++ +aeeAa a++aa ++l+g+
  Pp3c2_36690V3.1.p  7 QYRGVRVRR-WGKWVSEIREPQT---KKRIWLGSYRSAEEAAHAYDAALLCLRGP 57
                       6*****998.**********943...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.181764IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22765IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-30765IPR001471AP2/ERF domain
CDDcd000181.06E-28766No hitNo description
SMARTSM003807.4E-35770IPR001471AP2/ERF domain
PfamPF008473.1E-12856IPR001471AP2/ERF domain
PRINTSPR003676.6E-9819IPR001471AP2/ERF domain
PRINTSPR003676.6E-93046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSSSQHQYRG VRVRRWGKWV SEIREPQTKK RIWLGSYRSA EEAAHAYDAA LLCLRGPIAN  60
LNFPNQRPAL PSGSPGHYST REVQAAAAGA AAASVGRRFS FSEFMSPTRS SDSSDNEVKD  120
ITYPPGSHGT SSSQYVSWND TEFAEDQFDV ERDLYNALLI PPPYYNDTRD DSDNDDNPLD  180
GGFSLWNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-14166874Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359814.11e-138ethylene-responsive transcription factor ERF017-like
TrEMBLA0A2K1L4G91e-137A0A2K1L4G9_PHYPA; Uncharacterized protein
STRINGPP1S1_34V6.11e-137(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.15e-11ERF family protein