PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_40V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 373aa    MW: 42003.5 Da    PI: 7.6662
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_40V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.2e-13318366247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      ++W+ eE ell+++v+++G+g+Wk+I +       gRt+ ++k++w+++
   Pp3c2_40V3.1.p 318 KKWSNEEVELLKRGVQEHGKGHWKKILNDNTdafRGRTEVDLKDKWRNL 366
                      58*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.553312371IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-14313366IPR009057Homeodomain-like
SuperFamilySSF466891.35E-14314367IPR009057Homeodomain-like
SMARTSM007171.9E-8316369IPR001005SANT/Myb domain
CDDcd116608.38E-20318368No hitNo description
PfamPF002492.9E-10318366IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MRGGLLQPAL ERKDLERPLL ELKSELRTLL GEKRVDAQQA KVIRDEFRTL AAKAWILLGP  60
LVLEEFAAST IAGKRSLRAQ SSVRSPHPVA IPDSEDRSFH DTQETFVDRR FEQLEGALRA  120
SQSELQNILD VKIAEVKRSV VVLEDAHHSL KKLVKDQAEV CKQHVRLKNP GTTSQCLGLS  180
VLNLPPLAHA LGLEDDNMYE DKDRPSSNAH CFQLSSEYPH PSNSQDPYSS PSHPLLLDPG  240
LHNTKETARA LESSWSPSKI TGRVGFMHGG QREKRPFQEI DLCGEVLICN SEQTVRECKH  300
GESLLGIGSG STQRQTQKKW SNEEVELLKR GVQEHGKGHW KKILNDNTDA FRGRTEVDLK  360
DKWRNLEKYE RL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1KZI80.0A0A2K1KZI8_PHYPA; Uncharacterized protein
STRINGPP1S226_2V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-11MYB_related family protein