PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_4940V3.8.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 321aa    MW: 36019.1 Da    PI: 4.7025
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_4940V3.8.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-1873126356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+++++ eq++ Le+ Fe ++++  e++ +LAk+lgL+ rqV vWFqNrRa++k
  Pp3c2_4940V3.8.p  73 KKRRLSLEQVRSLERNFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 126
                       4558999**********************************************9 PP
2HD-ZIP_I/II127.55.6e-4172164193
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       ekkrrls eqv++LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dye+Lk+ayd+lk++ e+++ ++++L++e+++
  Pp3c2_4940V3.8.p  72 EKKRRLSLEQVRSLERNFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYETLKKAYDRLKADFEAVTLDTSALKAEVSR 164
                       69**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.35E-2049130IPR009057Homeodomain-like
PROSITE profilePS5007117.55668128IPR001356Homeobox domain
SMARTSM003897.1E-1671132IPR001356Homeobox domain
CDDcd000864.64E-1773129No hitNo description
PfamPF000461.2E-1573126IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-1975135IPR009057Homeodomain-like
PRINTSPR000315.5E-699108IPR000047Helix-turn-helix motif
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PRINTSPR000315.5E-6108124IPR000047Helix-turn-helix motif
PfamPF021834.3E-15128167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MLFSPLLLDF ELNKYLIESA GYVAVPRSSE SLENMMGACG QKLPYFSSFD GPSVEEQEDV  60
DEGIDEFAHH VEKKRRLSLE QVRSLERNFE VENKLEPERK MQLAKELGLQ PRQVAVWFQN  120
RRARWKTKQL ERDYETLKKA YDRLKADFEA VTLDTSALKA EVSRLKGISN DDVKPAEFVQ  180
GKCDTTSHPA SPAQSERSDI VSSRNRTTPT IHVDPVAPEE AGAHLTMSSD SNSSEVMDAD  240
SPRTSHTSAS RSTLSTSVVQ PDEGLGVAQY PHFSPENFVG PNMPEICADQ SLASQVKLEE  300
IHSFNPDQTF LLLPNWWDWA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.65050.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0280780.0AB028078.2 Physcomitrella patens mRNA for homeobox protein PpHB7, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368951.10.0homeobox-leucine zipper protein HOX20-like isoform X1
TrEMBLA9RG470.0A9RG47_PHYPA; Uncharacterized protein
STRINGPP1S7_280V6.40.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-43HD-ZIP family protein