PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_6080V3.4.p

Common Name

HDT1501, PHYPADRAFT_158891

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 348aa MW: 37024.4 Da PI: 4.175

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_6080V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	322	345	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykC+ C+++F++ s + +H H Pp3c2_6080V3.4.p 322 YKCTGCDRTFTTESAMSQHVAAkH 345 9******************87666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.741	322	347	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.0E-4	322	346	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0025	322	345	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	324	345	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MLAASTGVLL FSSDIRLLFF SSAAMEFWGV EVRAGKPTQC SPGEGMYLHV SQAALGESKA 60 KGGKGSERVV LKVHVDGSDI VLGTLAEGRC DQMPLDLVFD SDFSVSHSSS SSSIFLCGYR 120 TEGPREYDSE DEDEEEDEED EDEEDAGVPV AVPIKANGAA AEMLSKVTDK AAAAVANAIA 180 KGIEKKVVKK QVIQDDSSDE EDDSEDSDDS DEDMDEDDDD DDDDEDDEDD ESEEEELKIE 240 TPKAGKKRPA AEPLKVADKK SKTDSSPLQA AAAKGTKGEK QVTPSKDAPK TPTDKGAKAK 300 APKGTPTAPP TTPVSEKKFG QYKCTGCDRT FTTESAMSQH VAAKHKA*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MLAASTGVLL FSSDIRLLFF SSAAMEFWGV EVRAGKPTQC SPGEGMYLHV SQAALGESKA  60
KGGKGSERVV LKVHVDGSDI VLGTLAEGRC DQMPLDLVFD SDFSVSHSSS SSSIFLCGYR  120
TEGPREYDSE DEDEEEDEED EDEEDAGVPV AVPIKANGAA AEMLSKVTDK AAAAVANAIA  180
KGIEKKVVKK QVIQDDSSDE EDDSEDSDDS DEDMDEDDDD DDDDEDDEDD ESEEEELKIE  240
TPKAGKKRPA AEPLKVADKK SKTDSSPLQA AAAKGTKGEK QVTPSKDAPK TPTDKGAKAK  300
APKGTPTAPP TTPVSEKKFG QYKCTGCDRT FTTESAMSQH VAAKHKA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.3520	0.0	gametophore\| protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024368865.1	0.0	histone deacetylase HDT2-like isoform X3
TrEMBL	A9RGA1	1e-169	A9RGA1_PHYPA; HD2 type histone deacetylase
STRING	PP1S7_389V6.1	1e-170	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	1e-11	histone deacetylase 3

Link Out ? help Back to Top
Phytozome	Pp3c2_6080V3.4.p
Entrez Gene	5916192

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]