PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_6080V3.5.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 262aa MW: 27856.8 Da PI: 3.9328

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_6080V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9.3e-06	236	259	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykC+ C+++F++ s + +H H Pp3c2_6080V3.5.p 236 YKCTGCDRTFTTESAMSQHVAAkH 259 9******************87666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.42E-5	228	258	No hit	No description
PROSITE profile	PS50157	10.741	236	261	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.1E-4	236	260	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0025	236	259	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	238	259	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MLMAAILCLE LSQRGDEDEE EDEEDEDEED AGVPVAVPIK ANGAAAEMLS KVTDKAAAAV 60 ANAIAKGIEK KVVKKQVIQD DSSDEEDDSE DSDDSDEDDG MGHPFVSDLA SESDDEFDAG 120 DDDSDEDMDE DDDDDDDDED DEDDESEEEE LKIETPKAGK KRPAAEPLKV ADKKSKTDSS 180 PLQAAAAKGT KGEKQVTPSK DAPKTPTDKG AKAKAPKGTP TAPPTTPVSE KKFGQYKCTG 240 CDRTFTTESA MSQHVAAKHK A*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.3520	0.0	gametophore\| protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024368863.1	1e-165	histone deacetylase HDT2-like isoform X1
TrEMBL	A9RGA1	1e-163	A9RGA1_PHYPA; HD2 type histone deacetylase
STRING	PP1S7_389V6.1	1e-165	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c2_6080V3.5.p