PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_8960V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 730aa    MW: 79266.6 Da    PI: 6.9582
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_8960V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.4e-16516562455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn+ ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k+Lq
  Pp3c2_8960V3.2.p 516 VHNQSERRRRDRINEKMRALQELIPNS-----NKTDKASMLDEAIEYLKMLQ 562
                       6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.15E-19510571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.298512561IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-17515566No hitNo description
PfamPF000102.4E-13516562IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-18516569IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-17518567IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MNRLVPEWDR SSGMLDDLIP SSGFHGPANG KLDFLRSKST RFFQVPDQDT LEAGRIDNGH  60
IVMQGQTSKC GKPHWQVNYT SAWNSEQGTE DGVTPGKPVS PKSDAALEDV VNETATEAHP  120
THQIDAEHDE MVSWLQYPLD DTLERDYCSD FFGELPDSHI QLLRESFGQG AAKTLRTPYS  180
GAPGNDGFVN RASTADTAMM LGAGRAAGLL PQAGVEAFSK VRTIHSLQPS SVTRCQQPHP  240
SSSNGSTVCA TANVTTTRAP TSVPTSATPS NPMLPPKTQP AAPTVNTQPS PPNNRPGSMN  300
FSHFSRPAAI IKANLHSLAG INAAPPPNAR FKQQHSHLVK PTVEACTSTG SSIAESTSAG  360
NGQSGLHKDA KVQPLIMERE QSNGTEDSRW QVAPGLSPKK DRDCVVSGDC KNSPADQETC  420
RPSVVISDAV PASSEKGMSR ITHHPDIQEP TITSSSGGYG TSTDRLKEAA TSNKRKSNER  480
EETECQSEDG EDESVDTKKP VTGRGSTAKR SRAAEVHNQS ERRRRDRINE KMRALQELIP  540
NSNKTDKASM LDEAIEYLKM LQLQLQMMSI RTGMTLPPMV MPASLQQHMQ MPQIAAMPSM  600
GMGMGMVPMN LGHGMMMDMG VAAQGRAMMP LQSHVGPSLN GAIASASSMA DVHDPRYQTS  660
GVMDPYNAYM TRQHQPMQMT QAVSIDKYNA YMLQQCQLQQ HLRQHQQQPQ HLQHQQHQQA  720
PNMNGGPPH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1520525ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.165880.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361305.10.0uncharacterized protein LOC112275291 isoform X1
RefseqXP_024361311.10.0uncharacterized protein LOC112275291 isoform X1
RefseqXP_024361319.10.0uncharacterized protein LOC112275291 isoform X1
TrEMBLA0A2K1L0R30.0A0A2K1L0R3_PHYPA; Uncharacterized protein
STRINGPP1S84_22V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-32phytochrome interacting factor 3