PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_9700V3.1.p
Common NamePHYPADRAFT_165218, WRKY37
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 533aa    MW: 59922.4 Da    PI: 6.3594
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_9700V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.52.4e-22287345259
                       --SS-.EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgyn.WrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDg++ W+KYG K +++s+f r+YY+C++++C++kk v+ ++++p+++e+tY g+H+++
  Pp3c2_9700V3.1.p 287 DDGHRcWKKYGNKAIQNSTFCRGYYKCSMKECRAKKMVQPTDTNPSIFEVTYLGKHTCS 345
                       688755***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-23281346IPR003657WRKY domain
SuperFamilySSF1182901.96E-20285346IPR003657WRKY domain
SMARTSM007744.9E-24286346IPR003657WRKY domain
PfamPF031061.0E-19287344IPR003657WRKY domain
PROSITE profilePS5081116.122293347IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MDAASLRLDV HRNMSPLGIS QWTSPANAVE KVEEMLSKAI NYQKDLWDIL VVQSTESDPT  60
REMRQGDLIP PQLLKSLKSK LENSMDSCNS ALNRLKDIMV QTTSLPSLAS PENLELQKEW  120
NTYVGSFFLN ELSQLSSGPQ TCDDEELHEQ SMSLLVSEVE TQQNQGVSSL PSLELVSDWN  180
MLSEAPVSDL PPSPGVALMD QGRQSPSTCH LHIPEASCND SIASTDVQDL ADNPNDRRLM  240
TKLNSRGLRP RCGPKRDREQ TEERGATMSV VFQELKPGDD MKKGIPDDGH RCWKKYGNKA  300
IQNSTFCRGY YKCSMKECRA KKMVQPTDTN PSIFEVTYLG KHTCSSTSRR RIRSRPTPAH  360
APKPQANITE TRVASQCTST QNPKSQHPPH KTKPSGNDEQ NTTTVQRKNT QLPKPRQTTS  420
TMRSTIGDLR EGANSQREDN NWPSAGQQEA IENEGNMGMD SEGTNCSRED DEDDEQEARF  480
HYQSLRHHHH HPHHHHHPQS GFSFHTDTLL WSEILNSNHR EVWSSGNLQV EI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.76320.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369049.10.0uncharacterized protein LOC112279136 isoform X2
TrEMBLA0A2K1L0V30.0A0A2K1L0V3_PHYPA; Uncharacterized protein
STRINGPP1S84_106V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.17e-17WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]