PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_11280V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 444aa    MW: 50701 Da    PI: 9.8587
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_11280V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.5e-11380429147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        +++W++ E e l+ +v+++G g+WktI ++       Rt+ ++k++w+++
  Pp3c3_11280V3.1.p 380 KKNWSELEVEALKSGVRKYGEGHWKTILQKKKdvlYARTGVDLKDKWRNL 429
                        689********************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-13375433IPR009057Homeodomain-like
PROSITE profilePS5129413.56375434IPR017930Myb domain
SuperFamilySSF466892.96E-14377434IPR009057Homeodomain-like
SMARTSM007172.4E-8379432IPR001005SANT/Myb domain
PfamPF002491.4E-8380429IPR001005SANT/Myb domain
CDDcd116601.26E-16381431No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MMKYTLGKKL VWLWVWEYVL KHTSDVNLIR KLAQSLPVPE DVWRLKQMIL IKQLSFLVSR  60
GLDIQKTLDT LEALYHAFEI ECIDKAGMRS EDIPSFVRFK ASHPDAPEVN IETRDSRDLQ  120
SSELSNNEEE LFVWKGLQHP ILEVKEELRK LLRLSASEKL DASNAKVKII ENKLATLIRN  180
FWAIYSPVFL EKIEEAANNG KYKLQGLSVK VPSASDENVT DTVAENSANS KNEGVPESNI  240
RGLNNRCLEI PKDVNGRIKD LQKPRQTLDN NHIELQKFVK YPLPPLPHLK KPDSKTEAQE  300
NIPSEMSHNT SVKRSLLKPL PSTRVQGWDE ASSSCSPSDS RQIRLPHILR PNHVTLPPRY  360
STTGDYSFAT GSGLKRGRQK KNWSELEVEA LKSGVRKYGE GHWKTILQKK KDVLYARTGV  420
DLKDKWRNLV KSNFVHSCRD HTT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370934.10.0uncharacterized protein LOC112280106
RefseqXP_024370935.10.0uncharacterized protein LOC112280106
TrEMBLA0A2K1KU270.0A0A2K1KU27_PHYPA; Uncharacterized protein
STRINGPP1S74_197V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP15031424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-11telomere repeat binding factor 1