PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_15040V3.7.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 689aa    MW: 76474.6 Da    PI: 6.2992
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_15040V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.63.9e-31356414159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +dDg++WrKYGqK vk+s++pr+YYrCt+++Cpv+k+vers ed  +v++tYeg+H+h+
  Pp3c3_15040V3.7.p 356 MDDGFKWRKYGQKAVKNSPYPRNYYRCTTPQCPVRKRVERSCEDSGLVITTYEGTHTHQ 414
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-32343416IPR003657WRKY domain
SuperFamilySSF1182901.31E-28349416IPR003657WRKY domain
PROSITE profilePS5081130.836351416IPR003657WRKY domain
SMARTSM007744.2E-36356415IPR003657WRKY domain
PfamPF031061.6E-24357414IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MVVRKRRNQA RTDYSSKTSD HLKFPVLDRG HVIPGEACVV DSLVEIYQQR LALDEEGGDD  60
TGSNRESSFL SQDEFQRKSE RSGREVASPV NSTGIAGLQL NFDLVTMSPN PAMNPFLVDS  120
SSYAAESPWM ALRELEQQRT ATSQSHSSHD VGVRQGCEYA KEMARTPSDT ILHAELETDW  180
FRSSDNHFGP ECAASLSEDI KIGSTHPGHG NIQEAGMRHA QGEDMVESRM DRESSSPFMA  240
VHEADGSAAT QPNNVELSQN SSLSLSGSGG DSDEEWVRNA VVSSEAGERS GKRKSPNSSA  300
TGEFREADFD KPSSDAAELM QSKYSESATL RRRKKNVKTL RKPIYAIETR TDVDIMDDGF  360
KWRKYGQKAV KNSPYPRNYY RCTTPQCPVR KRVERSCEDS GLVITTYEGT HTHQTPGLFS  420
HPSAASGHGL PESKNPLGHG FEHFQIPRSP SLLPHPTEVS ALAVLQHMRI MQQLQDMSQQ  480
QIAPPDPLLA GSLQQESLLR AQQFLGLYDH PTGAIDRESF QYLPHARGSV SHAPSPYPSR  540
PSFHPTSETI LDRMHMLITP QHMRSRGTPE QSLHPATMDL DYHGYQHQMT SSPSQCDDLV  600
RRVLEAEEEG PVDVDVRDGS LSSDAKSDPA SASSETRTAT QSDFVTQLQT ELRNRMEKTF  660
LPSPTPPPPK GSVRRRWSKT MRNRGCEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-26346416474WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369755.10.0uncharacterized protein LOC112279497 isoform X1
RefseqXP_024369756.10.0uncharacterized protein LOC112279497 isoform X1
RefseqXP_024369757.10.0uncharacterized protein LOC112279497 isoform X1
RefseqXP_024369758.10.0uncharacterized protein LOC112279497 isoform X1
TrEMBLA0A2K1KUN90.0A0A2K1KUN9_PHYPA; Uncharacterized protein
STRINGPP1S25_173V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-33WRKY DNA-binding protein 57