PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_16820V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 971aa    MW: 104260 Da    PI: 6.0192
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_16820V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.99.3e-13360420262
                        XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                         + kr  r+++NRe+A+ sRqRKk +++eLe k  +++a   +L  ++++l+ e  +l+ +
  Pp3c3_16820V3.3.p 360 DDEKRRARLMRNRESAQLSRQRKKVYVDELEGKLRTMTATVADLNATISHLTAENLNLRRQ 420
                        56799***********************************************999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.3E-16359423IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.277361424IPR004827Basic-leucine zipper domain
PfamPF001703.0E-10362420IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-11363421No hitNo description
Gene3DG3DSA:1.20.5.1708.4E-16363421No hitNo description
CDDcd147041.93E-21364414No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 971 aa     Download sequence    Send to blast
MSFQIMERKI EIPELSEHDD DETLEDADPA VLTLSSSEAS ENWEKISEDW VSLFLNPAVL  60
DEHARPLPSD LENYSQFDCT SKEPKDHFYP QELVSDSLLL HSTDDQLSSD LGLGTSTNVV  120
EDIFGKEDPS IGVSGQPDLI HPKGEPLGHH DAAETHFPIA PHSHVTQVAY ASTRTEVYVS  180
TSPASSLTQV SGDSSSGMEV DLWKDKETVP DSSITLKREL TEEVSSHSES PTSLSSVTER  240
EGGASEMKEK NPQSDERGVG SRDVSGTGSA AGVATPSAAA QLATFSVRQL QNFGNVIKVG  300
LLARPGDRGV NVEDREESNK PLIREKCEIE SVKMQNQEVS EDQQSDQSDA DRKGEACDED  360
DEKRRARLMR NRESAQLSRQ RKKVYVDELE GKLRTMTATV ADLNATISHL TAENLNLRRQ  420
LGYYYPAPGV CPPRPGMPMQ VLPMGPYPGM VAGRPMYLGG QMPPVPIPRM KTQTPARSTK  480
RAKTGATNEG GDRKRVKLKA AGAASVAVMG LLCVAMLFGS VDPGLKGSSG VKDNTRVGSV  540
RVGARVLASW DEAGNPLNHI GVSSWDNEPG WLPLREGEYG PEREGVPSIH TRLASEKLQY  600
APEKSQIPKT ELEFSAQQSV HGNETLGLSA EQRRQPPSDY FSSGKAPLLM GSEMVPSNTS  660
QSFAASVFVP GANGLVKVDG NLIIQAIMAG DRAAKKQSEK KSKSVGKKKG KKQSEKTISE  720
GQAMKGLSVK VWDNLAPSKA EVIQNATTGP FVTARPLPGK VKSVLGTNNP VSPVLHGGAL  780
QQWMLGGLHG YNHSDTFFYL AGPVLNTGMC TELFQFDTAA AASSAGQAST SEAKNVAESV  840
AAKAAQGSPH NITSTLSGPI GPRSRRDPFA VPLPPVNSKP PAKGEGPRNG TDPRVENLVR  900
EQLHGQNLRD GISSMVVSVM AGPEEYGDSR RKGTKGLSRI FVVVLVDNQK YVTYSCILPS  960
GGPQAHVVAE *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.178257e-48protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371306.10.0bZIP transcription factor 28-like isoform X4
TrEMBLA0A2K1KUU60.0A0A2K1KUU6_PHYPA; Uncharacterized protein
STRINGPP1S25_341V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10800.19e-34bZIP family protein