PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_17230V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 488aa    MW: 54511 Da    PI: 6.3092
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_17230V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix415.2e-1390180281
           trihelix   2 WtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                        W++ e  aL++a re++ +l +++           ++  +W+ev   + + g+ r+pk+ + kw+nl++ +k+i++++++++ ++ s + +
  Pp3c3_17230V3.1.p  90 WQDAEMDALVRAFREVHMKLTSAAgngkkvkqvfkSANDKWQEVRTLLLASGVDRQPKEIERKWSNLSTAFKQIADWNNNKKMGRPSYWDL 180
                        ***************9999998644455666666699*******************************************98888777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-1090182No hitNo description
Gene3DG3DSA:3.40.50.6203.7E-70264478IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523747.62E-46267481No hitNo description
PfamPF014674.3E-24271452IPR004821Cytidyltransferase-like domain
TIGRFAMsTIGR004821.1E-39272478IPR005248Probable nicotinate-nucleotide adenylyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009860Biological Processpollen tube growth
GO:0034628Biological Process'de novo' NAD biosynthetic process from aspartate
GO:0000309Molecular Functionnicotinamide-nucleotide adenylyltransferase activity
GO:0004515Molecular Functionnicotinate-nucleotide adenylyltransferase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MQVEDMEEDA PPTPAVLEGT LSSSILDLDQ TEGHNHNFGA TYGREGREGN LDEGDIGGSN  60
GGGTGVGEDE EDRPDKEGEG MARKRRAEIW QDAEMDALVR AFREVHMKLT SAAGNGKKVK  120
QVFKSANDKW QEVRTLLLAS GVDRQPKEIE RKWSNLSTAF KQIADWNNNK KMGRPSYWDL  180
DESLKKEKTK AKELPATFRM QLFDAMAEFM GDRHGPRSRS PAQAPAPSLL PAPGLPRPPP  240
APGVVDVPLP VEKLANLIDA ANHKRRRVVI LAPGSFNPPT YMHLRMFELG RDALIAEGYH  300
VLGGYMSPVN DLYQKKGLAP AEHRIRMCEL AVADSPFIMV DSWEAKQNTF QRTLTVMARI  360
DTVVNFNNCA ADEKVKVMLL CGCDFLESFT TPGVWIPDQV RTLLQEYGIV CVNQDSKDAR  420
RLVFEHEILY NNRILVVDEV IQNSISATAI RRNLSRGLSV KYLTPDPVIN HIKMNHLYTN  480
IPLRNDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gzu_A2e-5326048012267NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1gzu_B2e-5326048012267NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1gzu_C2e-5326048012267NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263267KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.159880.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370462.10.0uncharacterized protein LOC112279923 isoform X2
TrEMBLA0A2K1KUU30.0A0A2K1KUU3_PHYPA; Uncharacterized protein
STRINGPP1S523_22V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-08Trihelix family protein