PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_19940V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 477aa    MW: 51334.3 Da    PI: 7.6708
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_19940V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.71.9e-08151174125
                        --S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                        +k+++C+++++ G C +Gd+C+F H
  Pp3c3_19940V3.3.p 151 PKQKPCSYWLK-GNCMRGDTCNFLH 174
                        699********.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0373764IPR000571Zinc finger, CCCH-type
SMARTSM003560.00383763IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-73862IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-54161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-7150175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.863150177IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6150176IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-6151174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5152175IPR000571Zinc finger, CCCH-type
SMARTSM003204.4E-4181220IPR001680WD40 repeat
SuperFamilySSF509783.57E-40181231IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.105.5E-13183275IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004000.021185220IPR001680WD40 repeat
PROSITE profilePS5008213.783188229IPR001680WD40 repeat
PROSITE profilePS5029412.736188229IPR017986WD40-repeat-containing domain
PRINTSPR003203.4E-7207221IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780207221IPR019775WD40 repeat, conserved site
SuperFamilySSF509783.57E-40267471IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.104.6E-28276468IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003205.9E-4290327IPR001680WD40 repeat
PfamPF004000.056295326IPR001680WD40 repeat
PROSITE profilePS5008211.778297336IPR001680WD40 repeat
PROSITE profilePS5029418.062297376IPR017986WD40-repeat-containing domain
PRINTSPR003203.4E-7314328IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780314328IPR019775WD40 repeat, conserved site
SMARTSM003206.0E-6330367IPR001680WD40 repeat
PfamPF004000.001332367IPR001680WD40 repeat
PROSITE profilePS500829.807337376IPR001680WD40 repeat
PRINTSPR003203.4E-7354368IPR020472G-protein beta WD-40 repeat
SMARTSM00320130387425IPR001680WD40 repeat
SMARTSM0032016428465IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MMAGMEVDDG STRVGSKRNY SRSGNAAGSG GGAGGRSHGQ QVCRYWQEGR CVKGDDCQWL  60
HPGNAGSTGR GNSAGSAKRS NNAHEYRDRE ARDPAGGWGY GGGGFTSGSN QGRPRNVSAR  120
WGRGGRGGRS GRGSHDQRDN RFQEGGRSHT PKQKPCSYWL KGNCMRGDTC NFLHAHTTAP  180
DMEMTTVLNG HEKAVRAIVL PEAHAQLYTG SQDESVRVWD CTTGKCTNVA PMGGDVGALI  240
FAKGWLFVGL PNEVKVINMA TLQQANLSGP KGQVHALAVT DDGLLFAGTH FEPAASMSGH  300
TGPVVTLMLI ANRLYSGSMD STIRVWEFAT LQCVQALEGH TNVVMDLLCW DSFLLSCSLD  360
GTIKIWSVNS SGQLELTFSH PEEENQSDSR NITLAGALKM CGCTDKAGKP VLLCSYNDNI  420
VRLYDLPTFT ERGQLFSREE VRALQVGLNN LVFSGDSRGD VKVWSWIDTH PEAVVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-151884641325Tako8
6g6n_A2e-151884641325Tako8
6g6n_B2e-151884641325Tako8
6g6n_C2e-151884641325Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369316.10.0zinc finger CCCH domain-containing protein 17-like isoform X2
TrEMBLA0A2K1KV770.0A0A2K1KV77_PHYPA; Uncharacterized protein
STRINGPP1S204_77V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-117C3H family protein