PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_21050V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 236aa MW: 26640.9 Da PI: 5.6561

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_21050V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C++ F+ + L H+++H Pp3c3_21050V3.1.p 57 FECRFCDMKFPKSQALGGHMNRH 79 89********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.1E-5	54	84	No hit	No description
PROSITE profile	PS50157	10.201	57	84	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MMFNNNNNRD SQYTTASNSS VPPTQQNQAV VYLNSGDGDE DNPNRRRKPE EDSENKFECR 60 FCDMKFPKSQ ALGGHMNRHR VEREQEEIQK ARNLLIAQQL PPPYYAGAQY YSRMDGASTS 120 VDPTGNFPST GGSFMTPQLP FYQPQAQSSV QNWLGNQITR PMERPSEAAE TSVHLRGNSS 180 RSQHTQSELP PRSTQFTQSE PTPRSTQFTR SEPQSNWLQA TQHSDSDVDG LEYIN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024371541.1	1e-176	zinc finger protein JAGGED-like isoform X1
TrEMBL	A0A2K1KVD2	1e-174	A0A2K1KVD2_PHYPA; Uncharacterized protein
STRING	PP1S47_285V6.1	1e-124	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3955	2	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05120.1	4e-09	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pp3c3_21050V3.1.p