PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_23050V3.1.p
Common NamePHYPADRAFT_74401
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 521aa    MW: 58129.2 Da    PI: 6.2103
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_23050V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.5e-1429129199
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+kv +  d  ++g +vlpk+ +eeh   ++k++++ +tl d  g++W+++++++ ++++  y+l+     +v+a +L+ gD+v F++ +  
  Pp3c3_23050V3.1.p  29 FDKVVSATDCRSTGHFVLPKRKVEEHfpPLSKPGGVWMTLIDDAGKEWSFEFCFWYSKESriYYLK-RFYPYVQATNLRGGDTVYFSRLE-P 118
                        8899999*********************88999*******************99777776668888.8999****************765.8 PP

                        EE..EEEEE-S CS
                 B3  89 efelvvkvfrk 99 
                        e++l+++v+++
  Pp3c3_23050V3.1.p 119 EGTLLMGVRKQ 129
                        88899999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-2123130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-1926127IPR015300DNA-binding pseudobarrel domain
CDDcd100178.77E-1427128No hitNo description
SMARTSM010192.4E-1129129IPR003340B3 DNA binding domain
PROSITE profilePS508639.93929130IPR003340B3 DNA binding domain
PfamPF023623.8E-1029129IPR003340B3 DNA binding domain
PROSITE profilePS5105013.655309359IPR011124Zinc finger, CW-type
PfamPF074969.1E-11314356IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MSINSPSSTN PNLLPISGKF SAANTTFLFD KVVSATDCRS TGHFVLPKRK VEEHFPPLSK  60
PGGVWMTLID DAGKEWSFEF CFWYSKESRI YYLKRFYPYV QATNLRGGDT VYFSRLEPEG  120
TLLMGVRKQK LASPKHGRAI KPKNELEAKV LSSRDLKVSS EEGKSLLDDG ALLEDHPATP  180
STDDASVDYD LCKSTDKKKM MRLTSPPPIS FDTQSVDHIA TGEAVATRKR RSITPESSEQ  240
INMKPGSQSS RGKRLGLTME DYYEWEDIQD LFRAPPGAIA TYTCVEGHEI EEYKEPPVLI  300
KKTFYSAEIQ EDDQWVQCDD CGCWRRLPAD AFVHARWVCS DNEWDSRRAR CNAPQELSDH  360
EMDRLLEGLS EADFAGSETV SKLESYDSDS GIPPFIPSEE EDSYCKQPQT WNEAYGQMQK  420
KASQLVLNKK CKSVTSGKEL SNGGEDLLRS TDLINLSSRS PASMFGYETP HPSTKAGKGH  480
QMCTGCSKPI GSAAQGCKRC GTLTEYGIRS RAQFSAGYRQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-2651371132B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231TRKRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372281.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372282.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372283.10.0B3 domain-containing protein Os07g0563300-like isoform X1
RefseqXP_024372284.10.0B3 domain-containing protein Os07g0563300-like isoform X1
TrEMBLA0A2K1KVM80.0A0A2K1KVM8_PHYPA; Uncharacterized protein
STRINGPP1S47_98V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.17e-48high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]