PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_25870V3.5.p

Common Name

PHYPADRAFT_224453

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NF-YB

Protein Properties

Length: 126aa MW: 13380.8 Da PI: 4.4853

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_25870V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	34.9	3.8e-11	16	66	40	90
NF-YB 40 sefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 efi +++se+++ c +++++ti+++ +l al lGf +y+ ++++ +++ Pp3c3_25870V3.5.p 16 KEFINLISSESNEICSKDEKRTIAPEHVLRALEILGFGEYIGEVQAAYEQH 66 59***************************************9998766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-20	16	111	IPR009072	Histone-fold
SuperFamily	SSF47113	8.15E-18	16	111	IPR009072	Histone-fold
Pfam	PF00808	3.6E-7	16	47	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MDTAGSRPKD DVSLPKEFIN LISSESNEIC SKDEKRTIAP EHVLRALEIL GFGEYIGEVQ 60 AAYEQHKNES LESPKVGGRW AKEGGGGGMT EEEAIAAQQR MFAEARARMN SGGAAAPAAQ 120 ANDSD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	4e-23	12	106	43	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369784.1	8e-87	uncharacterized protein LOC112279508 isoform X2
Swissprot	P49592	3e-42	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A9TQH0	1e-63	A9TQH0_PHYPA; Predicted protein
STRING	PP1S288_38V6.1	2e-64	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.3	1e-35	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	Pp3c3_25870V3.5.p
Entrez Gene	5944071

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]