PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_30010V3.8.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 883aa    MW: 96208.1 Da    PI: 6.375
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_30010V3.8.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.49.2e-172179357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le++++++++ps  +r +L k+     +++ +q+kvWFqNrR +ek+
  Pp3c3_30010V3.8.p 21 KYVRYTNEQVEALERVYHECPKPSSIRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 79
                       5678******************************9999*******************97 PP
2START148.75.1e-472074132203
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++++++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  ++   v e+l+d++ W+++++++e+l v+ ++  g++
  Pp3c3_30010V3.8.p 207 IAEETLTDFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDAS-KVTEVLKDRPAWQQDCRRMEVLGVLPTAngGTI 297
                        68999*****************************************************.8888888888****************9999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++++a+++l++ Rd+ ++Ry+  l++g +vi+++S++  q+ p     +s+vR+e++pSg+li+p+++g++ +++v+h d + +++++
  Pp3c3_30010V3.8.p 298 ELLYTQMYAPTTLASaRDYCTLRYTTILEDGNLVICERSLIGGQNGPPmppVQSFVRGEMFPSGYLIRPSDGGGCIIHVVDHYDNERWSVPE 389
                        ********************************************999888899*************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXX CS
              START 180 llrslvksglaegaktwvatlqrq 203
                        +lr+l++s ++ +++ + a+l+++
  Pp3c3_30010V3.8.p 390 VLRPLYESPAVLAQRSTIAALRHL 413
                        ********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4671680IPR001356Homeobox domain
SuperFamilySSF466894.71E-161783IPR009057Homeodomain-like
SMARTSM003893.7E-141884IPR001356Homeobox domain
CDDcd000861.80E-152181No hitNo description
PfamPF000462.7E-142279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-172379IPR009057Homeodomain-like
CDDcd146865.12E-473109No hitNo description
PROSITE profilePS5084822.668197397IPR002913START domain
CDDcd088751.58E-74201417No hitNo description
SMARTSM002343.5E-36206416IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-21207411IPR023393START-like domain
PfamPF018523.1E-44207413IPR002913START domain
SuperFamilySSF559617.28E-34207416No hitNo description
PfamPF086701.6E-42738880IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MGGRLKAAES WNEQTMDSSG KYVRYTNEQV EALERVYHEC PKPSSIRRHQ LIKESPILAN  60
IEPKQIKVWF QNRRCREKQR KEASRLVSVN AKLTALNKLL MEENERLAKH TSQLTLENHA  120
LRQQLPGLPL TDGRHRLSSQ NALKKEGAVN GGDESSTQGG ICVRIHGQAG VASTDTSCDS  180
AVTGGLPHRL TPQHSPRDTS PAGLLAIAEE TLTDFLAKAT GTAVDWIQLP GMKPGPDAIG  240
IIAISHGCVG IAARACGLVA LDASKVTEVL KDRPAWQQDC RRMEVLGVLP TANGGTIELL  300
YTQMYAPTTL ASARDYCTLR YTTILEDGNL VICERSLIGG QNGPPMPPVQ SFVRGEMFPS  360
GYLIRPSDGG GCIIHVVDHY DNERWSVPEV LRPLYESPAV LAQRSTIAAL RHLRRLASEE  420
SGEGNPRNGQ HPVVLRTLSQ RLAKGFKNAV NGFGDDGWVS TVSDGLEDVS VMLNATPKSM  480
EGQIASDKLL YSLGGGILCA KASMLLQNVS PSLLIGFLRE HRSEWADFDI DANVATSFRS  540
NGNSYARGGG VSHVQLPLPL AHSGEHGEIL EVVKLEGHSS VQHMVLSRDS FLLQLCSGID  600
ENAVGASAQL IFAPVDVALA EDIPLLPSGF CVSPIDASVV GGFDLDRTLD LASTLEGGSD  660
LRLNGDTKSN GTSGQMRSVL TIAFQFAYEV HTRETCAVMA RQYVRTVVAS VQRVAMALAP  720
SRAPAPLRQA PSNPDAISLV RHVLSSYRLH LALDLTRPEN RGDEALFKAF WHHTDAIVCC  780
AWKGMPEFVF ANRSGLEMFE TTTSSLQDLD WDKTLNENEC ELSYTTFTQV LQQDYCSLPA  840
GVRMSSTGRT TTYERALAWK VLDDNEAVEC IAFLFINWSF VT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.78210.0gametophore| protonema| sporophyte
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6572010.0DQ657201.1 Physcomitrella patens class III HD-Zip protein HB11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370815.10.0homeobox-leucine zipper protein HOX32-like isoform X2
RefseqXP_024370816.10.0homeobox-leucine zipper protein HOX32-like isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ0Q4300.0Q0Q430_PHYPA; Class III HD-Zip protein HB11
STRINGPP1S55_99V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]