PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_3030V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 77aa    MW: 8364.7 Da    PI: 6.6673
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_3030V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS28.91.4e-09477590118
              GRAS  90 ilkfshltaNqaIleavegeervHiiDfd 118
                         +f++l+ Nqa+l+a+ege+ vHi+D++
  Pp3c3_3030V3.1.p  47 ARQFAFLMGNQAVLDAMEGEKVVHIVDLE 75 
                       679************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509858.656176IPR005202Transcription factor GRAS
PfamPF035144.8E-74775IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
RAHCNHLGTQ TKNSIPPINC MEMGPWPGLY KALHSTHLPS VLDIISARQF AFLMGNQAVL  60
DAMEGEKVVH IVDLEA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.9194e-34protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381004.16e-24scarecrow-like protein 3
RefseqXP_024381005.16e-24scarecrow-like protein 3
RefseqXP_024381006.16e-24scarecrow-like protein 3
TrEMBLA0A2K1KT442e-50A0A2K1KT44_PHYPA; Uncharacterized protein (Fragment)
STRINGPP1S130_153V6.12e-23(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-11scarecrow-like 3