PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_31490V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 217aa    MW: 23373 Da    PI: 4.364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_31490V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.6e-16751855
                AP2  8 wdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++++r+rWv+eIr+p   +kr r++lg+f tae+Aaka++aa+ +l+g
  Pp3c3_31490V3.1.p  7 RNPQRQRWVSEIREP---NKRSRIWLGSFPTAEMAAKAYDAAAVCLRG 51
                       5899**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.044159IPR001471AP2/ERF domain
PfamPF008473.8E-9751IPR001471AP2/ERF domain
SMARTSM003804.8E-22765IPR001471AP2/ERF domain
CDDcd000181.39E-141061No hitNo description
Gene3DG3DSA:3.30.730.106.8E-241061IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-161061IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MCPALLRNPQ RQRWVSEIRE PNKRSRIWLG SFPTAEMAAK AYDAAAVCLR GRSVKLNFPD  60
SPPRCAARCN SPREVQAAAT AAAVACIPSA TALTVANFQS PAQTLESSPL HSSPSSSDMS  120
SGDEDSGEDS VQSFVAEGSQ ISPSEVVPVL EWVKVEFGDK ETVAAGDVDF DCDYSFISEF  180
AADSLLACSY NSKGRTEYLP IETHDAALYD STLWFF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.86630.0gametophore| sporophyte
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00657PBM25215497Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2022110.0DQ202211.2 Physcomitrella patens transcriptional factor DBF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369918.11e-147ethylene-responsive transcription factor ERF043-like
TrEMBLA0A2K1KWR01e-157A0A2K1KWR0_PHYPA; Uncharacterized protein
STRINGPP1S55_253V6.11e-147(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.18e-14ERF family protein