PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_31490V3.2.p
Common NamePHYPADRAFT_182268
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 262aa    MW: 28069.6 Da    PI: 7.2114
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_31490V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-194796255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ykGVr +  +g+Wv+eIr+p   +kr r++lg+f tae+Aaka++aa+ +l+g
  Pp3c3_31490V3.2.p 47 VYKGVRMRT-WGKWVSEIREP---NKRSRIWLGSFPTAEMAAKAYDAAAVCLRG 96
                       7*****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.2E-3547110IPR001471AP2/ERF domain
PROSITE profilePS5103222.81347104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3147106IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2147106IPR016177DNA-binding domain
PfamPF008473.5E-124796IPR001471AP2/ERF domain
CDDcd000181.28E-2148106No hitNo description
PRINTSPR003672.2E-94859IPR001471AP2/ERF domain
PRINTSPR003672.2E-97086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVEKVVVSSL RVKRGGNLLA PLKRNVSSIA KKSSTPKSGK PVGSPKVYKG VRMRTWGKWV  60
SEIREPNKRS RIWLGSFPTA EMAAKAYDAA AVCLRGRSVK LNFPDSPPRC AARCNSPREV  120
QAAATAAAVA CIPSATALTV ANFQSPAQTL ESSPLHSSPS SSDMSSGDED SGEDSVQSFV  180
AEGSQISPSE VVPVLEWVKV EFGDKETVAA GDVDFDCDYS FISEFAADSL LACSYNSKGR  240
TEYLPIETHD AALYDSTLWF F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1637104372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.86630.0gametophore| sporophyte
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00657PBM25215497Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2022110.0DQ202211.2 Physcomitrella patens transcriptional factor DBF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369918.10.0ethylene-responsive transcription factor ERF043-like
TrEMBLA9S8980.0A9S898_PHYPA; Predicted protein
STRINGPP1S55_253V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-23ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]