PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_31500V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 232aa    MW: 24903 Da    PI: 5.4455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_31500V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.6e-194292155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++++GVr +  +g+Wv+eIr+p   +kr r++lg+f tae+Aa+a++aa  +l+g
  Pp3c3_31500V3.1.p 42 PKFRGVRMRQ-WGKWVSEIREP---NKRSRIWLGSFPTAEMAARAYDAAVVCLRG 92
                       79*****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.96E-3342102No hitNo description
PfamPF008477.3E-124292IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-2243102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.8E-3243102IPR001471AP2/ERF domain
SMARTSM003803.0E-3843106IPR001471AP2/ERF domain
PROSITE profilePS5103223.05143100IPR001471AP2/ERF domain
PRINTSPR003671.1E-94455IPR001471AP2/ERF domain
PRINTSPR003671.1E-96682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVEKNRSQRA ATEVRVGARH YLAPVKKDLK SAVKNEETTA SPKFRGVRMR QWGKWVSEIR  60
EPNKRSRIWL GSFPTAEMAA RAYDAAVVCL RGPGATLNFP DSPPQLLPEC NSPKDIQVAA  120
AAAAAAAKPC TPVALPAKAK MQLLSAQLIS VKNGTNLSPS SHQTPAESDC SGTTGEGSSR  180
SGAKSEITQD EELDFTGESS SPVVAEEFVS LEDVELAWED AKFDDINFLD L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16431001472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.110160.0gametophore| protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369554.11e-170ethylene-responsive transcription factor ERF022-like
TrEMBLA0A2K1KWV11e-169A0A2K1KWV1_PHYPA; Uncharacterized protein
STRINGPP1S55_256V6.11e-169(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.17e-32ERF family protein