PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_33220V3.21.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 452aa    MW: 47874.8 Da    PI: 7.0414
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_33220V3.21.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-133781147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r +WT++E+++++da +++  + Wk+I + +g  +t  q++s+ qky
  Pp3c3_33220V3.21.p 37 RESWTEQEHDKFLDALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 81
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.32E-163187IPR009057Homeodomain-like
PROSITE profilePS5129415.0623286IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-63587IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-183584IPR006447Myb domain, plants
SMARTSM007171.0E-103684IPR001005SANT/Myb domain
PfamPF002497.1E-113781IPR001005SANT/Myb domain
CDDcd001675.86E-83982No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MLGVMVAGST VPGMTSVSVS EEGSKKIRKP YTITKSRESW TEQEHDKFLD ALQLFDRDWK  60
KIEAFVGSKT VIQIRSHAQK YFLKVQKNRT GEHVPPPRPK RKSAQPYPQK ASKCAQLQVS  120
DGLRTHSGQT ESSHGTCSRI PSMSPASPSV SAWVQQSVSP NTSISYDAPG TKPEVGGVSL  180
TSVRASSNSI SGSSPGGWPH VVSASPLAPD SCIRAAPDFA EVYKFIGSVF DPIVSGHLRT  240
LKEMAAIDRE TVLLLMRNLS INLSSPDFDE HKLFMPVIDK NVIREKPSEA EDSTSIPGAV  300
PQPCSDAGEA TTCVSGQGGT PAPSTPLLVG PRSGDSDHSQ QKASLLQTFA DNTTDAETPR  360
RHSYDGGGTM SASYTSCCVS PASPGILEPG STGLPTSTAL QPQSPVLTSE PESVYSLPRL  420
PSLPSLPSLP SLPSLPAGLV GDGIGVDNWW T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.156880.0gametophore| protonema
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371361.10.0protein REVEILLE 8-like isoform X3
SwissprotQ8H0W31e-84RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2K1KX440.0A0A2K1KX44_PHYPA; Uncharacterized protein
STRINGPP1S198_135V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.22e-83MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]