PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_33220V3.22.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 459aa    MW: 48535.5 Da    PI: 6.8452
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_33220V3.22.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.7e-134488147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r +WT++E+++++da +++  + Wk+I + +g  +t  q++s+ qky
  Pp3c3_33220V3.22.p 44 RESWTEQEHDKFLDALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 88
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.32E-163894IPR009057Homeodomain-like
PROSITE profilePS5129415.0623993IPR017930Myb domain
TIGRFAMsTIGR015572.8E-184291IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.8E-64294IPR009057Homeodomain-like
SMARTSM007171.0E-104391IPR001005SANT/Myb domain
PfamPF002497.2E-114488IPR001005SANT/Myb domain
CDDcd001676.01E-84689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MNAAGSEMLG VMVAGSTVPG MTSVSVSEEG SKKIRKPYTI TKSRESWTEQ EHDKFLDALQ  60
LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL KVQKNRTGEH VPPPRPKRKS AQPYPQKASK  120
CAQLQVSDGL RTHSGQTESS HGTCSRIPSM SPASPSVSAW VQQSVSPNTS ISYDAPGTKP  180
EVGGVSLTSV RASSNSISGS SPGGWPHVVS ASPLAPDSCI RAAPDFAEVY KFIGSVFDPI  240
VSGHLRTLKE MAAIDRETVL LLMRNLSINL SSPDFDEHKL FMPVIDKNVI REKPSEAEDS  300
TSIPGAVPQP CSDAGEATTC VSGQGGTPAP STPLLVGPRS GDSDHSQQKA SLLQTFADNT  360
TDAETPRRHS YDGGGTMSAS YTSCCVSPAS PGILEPGSTG LPTSTALQPQ SPVLTSEPES  420
VYSLPRLPSL PSLPSLPSLP SLPAGLVGDG IGVDNWWT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.156880.0gametophore| protonema
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371361.10.0protein REVEILLE 8-like isoform X3
SwissprotQ8H0W32e-84RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2K1KX440.0A0A2K1KX44_PHYPA; Uncharacterized protein
STRINGPP1S198_135V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-83MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]