PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_33360V3.2.p

Common Name

PHYPADRAFT_90569, PPTIM4

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

M-type_MADS

Protein Properties

Length: 135aa MW: 14385.2 Da PI: 6.6757

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_33360V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.7	3.1e-13	18	51	11	44
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstg 44 v +s+R++g++ KA+EL vLC+ +v +i+f ++g Pp3c3_33360V3.2.p 18 VGYSRRKHGLINKAKELGVLCGNQVVLIVFNPDG 51 88*****************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.442	1	60	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.2E-5	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.46E-14	17	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.5E-11	19	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.7E-6	22	37	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.7E-6	37	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MGRNMIVVEL LPDSEIPVGY SRRKHGLINK AKELGVLCGN QVVLIVFNPD GSDVEEVATN 60 GNVMDILQRF VDFREYHLQH VHSVQVSSTG APKDHPQAPP NSTVNPLTVQ PTGTSSSAQG 120 LNPAVRSTAS TSNT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024371836.1	7e-95	MADS-box transcription factor ANR1-like
TrEMBL	A9TBF7	2e-93	A9TBF7_PHYPA; Type I MADS-domain protein PPTIM4
STRING	PP1S198_149V6.1	3e-94	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	2e-10	AGAMOUS-like 21

Link Out ? help Back to Top
Phytozome	Pp3c3_33360V3.2.p
Entrez Gene	5939122

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]